Transcript 478 | MetamORF

Transcript

ID CARD

MetamORF ID

478

ENST00000481952

Name

BUB3-205

Strand

Biotype

processed_transcript

Start-end positions

123162254-123163241

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

HGNC:1151

Aliases

BUB3,
BUB3L, ENSG00000154473, HGNC:1151,
NCBI:9184, OFF:BUB3

Chr 10

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
405621	183	AAC ...	NKK ...	Ribo-seq	AAC	weak	1	sORFs_org_Human	ncRNA sORF	HCT116
496	30	CTG ...	LKM ...	Ribo-seq	CTG	moderate	22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
484	93	TTG ...	LSR ...	Ribo-seq	TTG		14	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, RPE-1, THP-1
3199847	288	AAT ...	NIE ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	HEK293
482	45	CTG ...	LRY ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MM1S, RPE-1, THP-1
492	54	ATG ...	MKW ...	Ribo-seq	ATG	weak	27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
899839	81	ACC ...	TQS ...	Ribo-seq	ACC		1	sORFs_org_Human	ncRNA sORF	Jurkat
498	30	GTG ...	VTD ...	Ribo-seq	GTG	weak	27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
3199652	33	TAC ...	YAC ...	Ribo-seq	TAC	strong	1	sORFs_org_Human	ncRNA sORF	HEK293
899850	33	CCC ...	PHE ...	Ribo-seq	CCC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
902074	261	GCC ...	AIS ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
899862	45	ATC ...	IFI ...	Ribo-seq	ATC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
1129407	261	TTG ...	LDP ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
899842	216	TCT ...	SDG ...	Ribo-seq	TCT	strong	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
488	171	CTG ...	LCQ ...	Ribo-seq	CTG	weak	33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
899854	90	TCA ...	SYM ...	Ribo-seq	TCA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
480	66	TTG ...	LSI ...	Ribo-seq	TTG	weak	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
899837	243	GTA ...	VQK ...	Ribo-seq	GTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
477	84	TTG ...	LKA ...	Ribo-seq	TTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
899846	69	AAT ...	NSI ...	Ribo-seq	AAT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
490	51	GTG ...	VPI ...	Ribo-seq	GTG	moderate	24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
494	45	ATG ...	MTQ ...	Ribo-seq	ATG	weak	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
486	72	ATG ...	MPF ...	Ribo-seq	ATG		9	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, RPE-1
899852	48	GCA ...	ASH ...	Ribo-seq	GCA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
899844	54	ACT ...	TVP ...	Ribo-seq	ACT	strong	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
899860	33	ATC ...	ILK ...	Ribo-seq	ATC	moderate	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
99025	276	GTG ...	VAV ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	Brain, HEK293, HeLa
899858	60	ATA ...	ICM ...	Ribo-seq	ATA	weak	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
899848	60	GGT ...	GTP ...	Ribo-seq	GGT	moderate	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
899835	258	GAC ...	DPS ...	Ribo-seq	GAC		1	sORFs_org_Human	ncRNA sORF	Jurkat

Export data