Transcript 469 | MetamORF

Transcript

ID CARD

MetamORF ID

469

ENST00000407911

Name

BUB3-204

Strand

Biotype

protein_coding

Start-end positions

123154859-123162693

CDS Start-stop positions

123154918-

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

HGNC:1151

Aliases

BUB3,
BUB3L, ENSG00000154473, HGNC:1151,
NCBI:9184, OFF:BUB3

Chr 10

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
475	84	TTG ...	LWE ...	Ribo-seq	TTG	weak	13	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
1720550	63	ATG ...	MLG ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	Blood, MDA-MB-231
900736	84	GGG ...	GIP ...	Ribo-seq	GGG		1	sORFs_org_Human	sORF	Jurkat
278882	51	TTG ...	LGP ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, LCL
899823	99	CCT ...	PGT ...	Ribo-seq	CCT		1	sORFs_org_Human	sORF	Jurkat
1720548	114	CTG ...	LEV ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	Blood, MDA-MB-231
279914	135	TTG ...	LSP ...	Ribo-seq	TTG		13	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
278884	42	ATG ...	MMP ...	Ribo-seq	ATG	weak	12	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
99020	33	ATG ...	MLG ...	Ribo-seq	ATG		15	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
99022	30	CTG ...	LGP ...	Ribo-seq	CTG		14	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
2679389	33	CTG ...	LGA ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	sORF	RPE-1
405617	54	GGG ...	GIP ...	Ribo-seq	GGG		2	sORFs_org_Human	sORF	HCT116, Jurkat
278886	39	ATG ...	MPL ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
473	84	CTG ...	LEV ...	Ribo-seq	CTG		26	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
907	99	ATG ...	MCR ...	Ribo-seq	ATG		16	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
899825	69	TGC ...	CRP ...	Ribo-seq	TGC		1	sORFs_org_Human	sORF	Jurkat
899830	72	ATC ...	IRQ ...	Ribo-seq	ATC		1	sORFs_org_Human	sORF	Jurkat
405615	54	ATA ...	ILS ...	Ribo-seq	ATA	weak	2	sORFs_org_Human	sORF	HCT116, Jurkat
468	108	TTG ...	LSP ...	Ribo-seq	TTG		25	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
899833	168	ACG ...	TEH ...	Ribo-seq	ACG		1	sORFs_org_Human	sORF	Jurkat
278880	54	TTG ...	LLG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	sORF	HEK293T, LCL
1720552	60	CTG ...	LGP ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	Blood, MDA-MB-231
278888	51	CTG ...	LSR ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
471	72	ATG ...	MCR ...	Ribo-seq	ATG		24	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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