Metam
ORF

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Transcript

ID CARD

MetamORF ID

1062

ID

ENST00000376663

Name

BMI1-201

Strand

+

Biotype

protein_coding

Start-end positions

22321211-22331484

CDS Start-stop positions

22326450-22329542

CDS Relative positions

-

Sequences

Transcript sequence

CAG ...

Gene

ID

HGNC:1066

Aliases

BMI1,
ENSG00000168283, HGNC:1066, NCBI:648,
OFF:BMI1, PCGF4, RNF51


Chr 10

ORFs

28 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1815404 36

TTG ...

LFG ...

Ribo-seq
TTG weak 1 sORFs_org_Human
    Downstream
    sORF
HeLa
1815408 99

TTG ...

LLI ...

Ribo-seq
TTG moderate 1 sORFs_org_Human
    Downstream
    sORF
HeLa
404063 201

GAG ...

EVE ...

Ribo-seq
GAG moderate 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
HCT116
2295745 147

ATG ...

MLE ...

Ribo-seq
ATG weak 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1815414 42

CTG ...

LFC ...

Ribo-seq
CTG moderate 1 sORFs_org_Human
    Downstream
    sORF
HeLa
1815406 111

TTG ...

LGH ...

Ribo-seq
TTG strong 1 sORFs_org_Human
    Downstream
    sORF
HeLa
1815410 63

TTG ...

LIV ...

Ribo-seq
TTG weak 1 sORFs_org_Human
    Downstream
    sORF
HeLa
1716544 36

ATG ...

MGH ...

Ribo-seq
ATG moderate 2 sORFs_org_Human
Johnstone2016
    Alternative
    Downstream
    Overlapping
    sORF
Blood, Brain_tumor, HEK293,
HeLa, HFF
1815402 66

ATG ...

MVS ...

Ribo-seq
ATG strong 2 sORFs_org_Human
Johnstone2016
    Alternative
    Downstream
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1815412 30

TTG ...

LLL ...

Ribo-seq
TTG weak 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
96531 54

ATG ...

MRR ...

Ribo-seq
ATG moderate 1 Johnstone2016
    sORF
    Upstream
Brain_tumor, HEK293, HeLa,
HFF
1716537 51

ATG ...

MPS ...

Ribo-seq
ATG moderate 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
894112 45

GAG ...

EPR ...

Ribo-seq
GAG weak 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
Jurkat
280184 39

TTG ...

LNS ...

Ribo-seq
TTG 7 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, HeLa, LCL,
MDA-MB-231
1061 30

TTG ...

LTR ...

Ribo-seq
TTG 8 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
LCL, MDA-MB-231
1716542 30

TTG ...

LPI ...

Ribo-seq
TTG weak 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
MDA-MB-231
1815418 60

ATG ...

MIV ...

Ribo-seq
ATG moderate 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
629799 90

ATG ...

MRG ...

Ribo-seq
ATG moderate 8 sORFs_org_Human
Johnstone2016
    Alternative
    sORF
    Upstream
Brain_tumor, HEK293, HeLa,
HFF, MDA-MB-231, RPE-1,
THP-1
1720815 45

TTG ...

LPT ...

Ribo-seq
TTG 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, MDA-MB-231
2295741 33

ATG ...

MSK ...

Ribo-seq
ATG moderate 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
629805 33

ATG ...

MAA ...

Ribo-seq
ATG strong 1 Johnstone2016
    Alternative
    sORF
    Upstream
Brain_tumor, HEK293, HeLa,
HFF
1815416 72

ATG ...

MHS ...

Ribo-seq
ATG weak 2 sORFs_org_Human
Johnstone2016
    Alternative
    Downstream
    sORF
Brain_tumor, HEK293, HeLa,
HFF
3298495 9

ATG ...

MK ...

Ribo-seq
ATG moderate 1 Johnstone2016
    Alternative
    sORF
    Upstream
Brain_tumor, HEK293, HeLa,
HFF
522455 63

ATG ...

MGM ...

Ribo-seq
ATG strong 9 sORFs_org_Human
    Alternative
    sORF
    Upstream
Brain, HEK293, HeLa,
MDA-MB-231, RPE-1, THP-1,
U2OS
522457 57

ATG ...

MWA ...

Ribo-seq
ATG moderate 9 sORFs_org_Human
    Alternative
    sORF
    Upstream
Brain, HEK293, HeLa,
MDA-MB-231, RPE-1, THP-1,
U2OS
273474 72

ATG ...

MEP ...

Ribo-seq
ATG moderate 6 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HEK293,
HeLa, HFF, LCL,
MDA-MB-231, THP-1
2295728 204

TTG ...

LEV ...

Ribo-seq
TTG strong 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
MDA-MB-231
1716535 36

ATG ...

MIK ...

Ribo-seq
ATG weak 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS