Transcript 1501 | MetamORF

Transcript

ID CARD

MetamORF ID

1501

ENST00000465645

Name

ATPIF1-202

Strand

Biotype

protein_coding

Start-end positions

28236154-28238098

CDS Start-stop positions

28236184-28236456

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:871

Aliases

ATP5IF1,
ATPI, ATPIF1, ATPIP,
ENSG00000130770, HGNC:871, IP,
MGC1167, MGC8898, NCBI:93974,
OFF:ATP5IF1

Chr 1

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
406519	234	GGC ...	GGA ...	Ribo-seq	GGC		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Breast, HCT116, HeLa, Jurkat, THP-1
3400144	183	ATG ...	MAV ...	Predicted	ATG		1	Mackowiak2015	CDS sORF
3199495	66	AAC ...	NMM ...	Ribo-seq	AAC	weak	1	sORFs_org_Human	Alternative Downstream sORF	HEK293
1500	222	GTG ...	VAW ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, HeLa, LCL, loayza_puch_2016, MM1S
1503	210	GTG ...	VGR ...	Ribo-seq	GTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, HEK293T, HeLa, LCL, MM1S
1522	54	CTG ...	LSH ...	Ribo-seq	CTG	moderate	20	sORFs_org_Human	Alternative Downstream sORF	BJ, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MM1S
1821782	48	ATG ...	MAH ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1524	123	CTG ...	LAA ...	Ribo-seq	CTG	moderate	34	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406565	72	GAG ...	EIE ...	Ribo-seq	GAG	moderate	6	sORFs_org_Human	Alternative Downstream sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
899366	99	GAA ...	EEE ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Alternative Downstream sORF	Jurkat
899336	240	CCG ...	PRM ...	Ribo-seq	CCG	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
1821776	69	GTG ...	VHT ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
899372	81	AAG ...	KKS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	Jurkat
406534	51	GGG ...	GLH ...	Ribo-seq	GGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1534	33	TTG ...	LSA ...	Ribo-seq	TTG	moderate	32	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1532	60	CTG ...	LQK ...	Ribo-seq	CTG	weak	33	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1821780	60	GTG ...	VCH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1526	114	TTG ...	LKK ...	Ribo-seq	TTG	moderate	33	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1530	54	TTG ...	LSV ...	Ribo-seq	TTG	moderate	33	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406542	30	TGG ...	WGL ...	Ribo-seq	TGG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HeLa, Jurkat, THP-1
1821784	60	CTG ...	LCR ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
899414	33	CAG ...	QKI ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	Jurkat
406521	69	GAA ...	ECR ...	Ribo-seq	GAA	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HeLa, Jurkat, THP-1
406559	135	AGT ...	SRE ...	Ribo-seq	AGT	weak	2	sORFs_org_Human	Alternative Downstream sORF	HCT116, Jurkat
406563	81	CAT ...	HKK ...	Ribo-seq	CAT	weak	4	sORFs_org_Human	Alternative Downstream sORF	HCT116, HeLa, Jurkat, THP-1
1528	87	ATG ...	MKK ...	Ribo-seq	ATG	moderate	33	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

Export data