Transcript 303814

Transcript

ID CARD

MetamORF ID

303814

ENST00000548169

Name

ATP2A2-207

Strand

Biotype

protein_coding

Start-end positions

110292049-110346621

CDS Start-stop positions

-110346470

CDS Relative positions

Sequences

Transcript sequence

AAC ...

Genome browsers

UCSC

Gene

HGNC:812

Aliases

ATP2A2,
ATP2B, DAR, ENSG00000174437,
HGNC:812, NCBI:488, OFF:ATP2A2,
SERCA2

Chr 12

ORFs

54 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1300223	192	TTG ...	LEL ...	Ribo-seq	TTG		4	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, MDA-MB-231
2339295	99	CTG ...	LES ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231
412769	87	GTA ...	VMT ...	Ribo-seq	GTA		1	sORFs_org_Human	sORF	HCT116
540550	30	GTG ...	VQS ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	sORF	HEK293, HeLa, MDA-MB-231, Skeletal_muscle, THP-1, U2OS
1520113	63	GTG ...	VLL ...	Ribo-seq	GTG		5	sORFs_org_Human	sORF	BJ, Blood, HeLa, hES, MDA-MB-231
1052179	117	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, MDA-MB-231
1052181	96	CTG ...	LVH ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, MDA-MB-231
2342534	87	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF	MDA-MB-231, RPE-1
540533	51	CTG ...	LWP ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231, Monocyte, U2OS
1738745	60	GTG ...	VTE ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231
2339299	54	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	sORF	MDA-MB-231
303831	45	TTG ...	LKA ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	sORF	HEK293, HeLa, LCL, MDA-MB-231, Skeletal_muscle, U2OS
643357	99	GTG ...	VPA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	sORF	BJ, HeLa, MDA-MB-231, THP-1
1300227	159	TTG ...	LFE ...	Ribo-seq	TTG		6	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
3202049	81	TGG ...	WRW ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	sORF	HEK293
540528	153	CTG ...	LRG ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	sORF	BJ, HEK293, HeLa, loayza_puch_2016, MDA-MB-231, MM1S, THP-1, U2OS
1520099	123	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	BJ
1518651	60	CTG ...	LKV ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	sORF	BJ, Blood, HeLa, MDA-MB-231
1518649	66	GTG ...	VLL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	sORF	BJ, Blood, HeLa, MDA-MB-231
1831321	39	TTG ...	LLE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	sORF	HeLa, MDA-MB-231
540535	33	CTG ...	LSP ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, Monocyte, U2OS
1300229	141	CTG ...	LWK ...	Ribo-seq	CTG		6	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
1520103	102	CTG ...	LIP ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	BJ
541953	30	GTG ...	VVQ ...	Ribo-seq	GTG		4	sORFs_org_Human	sORF	BJ, Blood, MDA-MB-231, U2OS
1300221	219	CTG ...	LQS ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, MDA-MB-231
1518653	54	GTG ...	VSL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, MDA-MB-231
2339297	75	CTG ...	LSF ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	sORF	MDA-MB-231
1740624	33	CTG ...	LPT ...	Ribo-seq	CTG		5	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
1520109	84	ATG ...	MTL ...	Ribo-seq	ATG		4	sORFs_org_Human	sORF	BJ, HeLa, MDA-MB-231, RPE-1
303816	72	CTG ...	LGT ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	sORF	BJ, HAP1, HEK293, HeLa, LCL, MDA-MB-231, U2OS
1520101	117	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	BJ
541951	36	CTG ...	LTV ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	BJ, Blood, MDA-MB-231, U2OS
1518655	48	TTG ...	LTG ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231
306285	96	GTG ...	VLF ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF	HeLa, LCL, MDA-MB-231
540526	30	GTG ...	VHP ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1, U2OS
1520115	60	CTG ...	LLH ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	BJ, Blood, hES, MDA-MB-231
303813	54	TTG ...	LAA ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	sORF	BJ, Blood, HEK293, HEK293T, LCL, MDA-MB-231
1520119	42	TTG ...	LLL ...	Ribo-seq	TTG		4	sORFs_org_Human	sORF	BJ, Blood, hES, MDA-MB-231
1740622	42	TTG ...	LRT ...	Ribo-seq	TTG		7	sORFs_org_Human	sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1, Skeletal_muscle
1300218	231	CTG ...	LKV ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, MDA-MB-231
1831319	39	ATG ...	MNS ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	sORF	HEK293, HeLa, MDA-MB-231
1520117	57	CTG ...	LHG ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	BJ, Blood, MDA-MB-231
925926	42	TGT ...	CGH ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	sORF	Jurkat
1300231	129	TTG ...	LVV ...	Ribo-seq	TTG		4	sORFs_org_Human	sORF	HEK293T, HeLa, MDA-MB-231, RPE-1
540531	54	CTG ...	LLW ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, Monocyte, U2OS
1300235	120	CTG ...	LYF ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	HEK293T
1831317	42	TTG ...	LMN ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	sORF	HEK293, HeLa, MDA-MB-231
303818	33	CTG ...	LPE ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	sORF	BJ, Blood, HEK293, LCL, MDA-MB-231, Skeletal_muscle, U2OS
1831323	30	TTG ...	LNP ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	sORF	HeLa, hES, MDA-MB-231
1300225	165	ATG ...	MPL ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
1520111	75	CTG ...	LLP ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	BJ, Blood, HeLa, MDA-MB-231
1740620	54	CTG ...	LDQ ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	Blood, HEK293, hES, MDA-MB-231
412771	54	AAG ...	KKC ...	Ribo-seq	AAG		1	sORFs_org_Human	sORF	HCT116
1520121	39	CTG ...	LLT ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	BJ, Blood, MDA-MB-231

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