Transcript 110032

Transcript

ID CARD

MetamORF ID

110032

ENST00000547050

Name

ATP2A2-205

Strand

Biotype

retained_intron

Start-end positions

110325801-110332632

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

HGNC:812

Aliases

ATP2A2,
ATP2B, DAR, ENSG00000174437,
HGNC:812, NCBI:488, OFF:ATP2A2,
SERCA2

Chr 12

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
303767	66	TTG ...	LAR ...	Ribo-seq	TTG	strong	18	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
303771	63	ATG ...	MNL ...	Ribo-seq	ATG	weak	14	sORFs_org_Human	Intronic sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, U2OS
925877	75	TCA ...	SSS ...	Ribo-seq	TCA		1	sORFs_org_Human	Intronic sORF	Jurkat
303758	78	CTG ...	LSS ...	Ribo-seq	CTG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, Skeletal_muscle, THP-1, U2OS
303756	84	CTG ...	LSL ...	Ribo-seq	CTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
303754	90	GTG ...	VNL ...	Ribo-seq	GTG		19	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
540484	33	TTG ...	LLL ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	Intronic sORF	BJ, HEK293, HFF, MDA-MB-231, MM1S, U2OS
303760	63	CTG ...	LIP ...	Ribo-seq	CTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, Skeletal_muscle, THP-1, U2OS
110031	39	CTG ...	LST ...	Ribo-seq	CTG		19	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, Skeletal_muscle, U2OS
303769	51	ATG ...	MKW ...	Ribo-seq	ATG	moderate	14	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
303765	84	CTG ...	LEL ...	Ribo-seq	CTG	moderate	18	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
303762	51	CTG ...	LTH ...	Ribo-seq	CTG		16	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, Skeletal_muscle, U2OS
540486	30	CTG ...	LLG ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	Intronic sORF	BJ, HEK293, HFF, MDA-MB-231, MM1S, RPE-1, U2OS

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