Transcript 110094

Transcript

ID CARD

MetamORF ID

110094

ENST00000313432

Name

ATP2A2-202

Strand

Biotype

retained_intron

Start-end positions

110345437-110351093

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:812

Aliases

ATP2A2,
ATP2B, DAR, ENSG00000174437,
HGNC:812, NCBI:488, OFF:ATP2A2,
SERCA2

Chr 12

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
303833	108	GTG ...	VTR ...	Ribo-seq	GTG		15	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293T, HeLa, hES, LCL, RPE-1, THP-1, U2OS
945175	177	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	Brain
2000670	171	TTG ...	LPV ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HeLa
925943	180	CAT ...	HLA ...	Ribo-seq	CAT		1	sORFs_org_Human	Intronic sORF	Jurkat
3187560	159	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
110093	282	TTG ...	LSE ...	Ribo-seq	TTG		19	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, RPE-1, THP-1, U2OS
945168	231	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	Brain
110098	261	CTG ...	LRM ...	Ribo-seq	CTG		17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, RPE-1, THP-1, U2OS
540560	36	CTG ...	LCV ...	Ribo-seq	CTG		9	sORFs_org_Human	Intronic sORF	Brain, HEK293, HeLa, hES, RPE-1, THP-1, U2OS
540557	213	CTG ...	LSM ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	Brain, HeLa, U2OS
945173	189	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	Brain
945166	267	TTG ...	LPW ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	Brain
110100	90	GTG ...	VSA ...	Ribo-seq	GTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
412105	267	TCC ...	SLL ...	Ribo-seq	TCC		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
540555	228	GTG ...	VGS ...	Ribo-seq	GTG		8	sORFs_org_Human	Intronic sORF	BJ, Brain, HEK293, HeLa, hES, Jurkat, U2OS
925947	117	ACC ...	TLA ...	Ribo-seq	ACC		1	sORFs_org_Human	Intronic sORF	Jurkat
925941	201	GAG ...	EDA ...	Ribo-seq	GAG		1	sORFs_org_Human	Intronic sORF	Jurkat
945179	192	CTG ...	LIL ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	Brain, HeLa
110096	264	TTG ...	LLR ...	Ribo-seq	TTG		17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, RPE-1, THP-1, U2OS
412107	222	TCC ...	SIC ...	Ribo-seq	TCC		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
1302019	192	CCC ...	PLG ...	Ribo-seq	CCC		2	sORFs_org_Human	Intronic sORF	BJ, Breast

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