Transcript 3206 | MetamORF

Transcript

ID CARD

MetamORF ID

3206

ENST00000526423

Name

ARHGAP1-204

Strand

Biotype

retained_intron

Start-end positions

46678723-46681516

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:673

Aliases

ARHGAP1,
Cdc42GAP, CDC42GAP, ENSG00000175220,
HGNC:673, NCBI:392, OFF:ARHGAP1,
p50rhoGAP, RhoGAP

Chr 11

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3205	120	CTG ...	LWA ...	Ribo-seq	CTG	weak	17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
527794	51	CTG ...	LDH ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1007913	102	CTG ...	LQV ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	guo_2014, HAP1
3113582	63	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	hES
3208	123	CTG ...	LLW ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
906479	81	AAT ...	NPI ...	Ribo-seq	AAT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
1820499	75	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
3210	147	CTG ...	LAV ...	Ribo-seq	CTG	strong	18	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
634381	39	GTG ...	VGQ ...	Ribo-seq	GTG	strong	4	sORFs_org_Human	Intronic sORF	HEK293, hES, MDA-MB-231, THP-1
906477	63	ACC ...	TKF ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
634378	33	CTG ...	LFP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HeLa, hES, MDA-MB-231, THP-1
906481	105	GCG ...	AAI ...	Ribo-seq	GCG	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
3216	39	CTG ...	LPN ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	guo_2014, HEK293, HeLa

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