Transcript 275674

Transcript

ID CARD

MetamORF ID

275674

ENST00000487653

Name

AP3M1-204

Strand

Biotype

processed_transcript

Start-end positions

74138256-74150757

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:569

Aliases

AP3M1,
ENSG00000185009, HGNC:569, NCBI:26985,
OFF:AP3M1

Chr 10

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
896582	165	GTA ...	VPR ...	Ribo-seq	GTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
896580	39	AAT ...	NDP ...	Ribo-seq	AAT	strong	4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, Jurkat, THP-1
630789	93	CTG ...	LEC ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293, RPE-1, THP-1
896588	114	TGT ...	CLT ...	Ribo-seq	TGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
896586	93	CAG ...	QRR ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
404658	204	GCT ...	AAD ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	HCT116
404660	231	GAT ...	DYF ...	Ribo-seq	GAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
275676	45	TTG ...	LED ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	ncRNA sORF	LCL
404664	261	TGG ...	WKS ...	Ribo-seq	TGG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
404666	297	ATA ...	INC ...	Ribo-seq	ATA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
275673	33	CTG ...	LEE ...	Ribo-seq	CTG	strong	18	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896577	267	AAG ...	KHW ...	Ribo-seq	AAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
896584	36	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
404662	240	TCT ...	SVC ...	Ribo-seq	TCT		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat

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