Transcript 1381 | MetamORF

Transcript

ID CARD

MetamORF ID

1381

ENST00000372745

Name

AP3M1-202

Strand

Biotype

protein_coding

Start-end positions

74122964-74150842

CDS Start-stop positions

74123810-74138379

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

HGNC:569

Aliases

AP3M1,
ENSG00000185009, HGNC:569, NCBI:26985,
OFF:AP3M1

Chr 10

ORFs

55 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1718361	36	ATG ...	MDF ...	Ribo-seq	ATG	strong	11	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
280995	69	TTG ...	LLT ...	Ribo-seq	TTG		14	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1
523807	36	ATG ...	MAS ...	Ribo-seq	ATG	strong	8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1, U2OS
275662	30	CTG ...	LLS ...	Ribo-seq	CTG		9	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HEK293, HeLa, hES, LCL
95577	33	ATG ...	MKP ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
896563	33	AGA ...	RQW ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2538251	99	CTG ...	LEP ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
95599	159	CTG ...	LSV ...	Ribo-seq	CTG	moderate	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
523811	63	ATG ...	MLG ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, U2OS
280993	66	CTG ...	LTL ...	Ribo-seq	CTG		13	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
280980	120	ATG ...	MSA ...	Ribo-seq	ATG		10	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
95593	123	CTG ...	LLM ...	Ribo-seq	CTG	moderate	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
280991	93	CTG ...	LLS ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
896572	96	TCA ...	SFQ ...	Ribo-seq	TCA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
280978	78	CTG ...	LKE ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, LCL, MDA-MB-231
95595	141	TTG ...	LKL ...	Ribo-seq	TTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
275646	66	ATG ...	MGR ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
630771	45	ATG ...	MGC ...	Ribo-seq	ATG	strong	9	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
896559	39	TTC ...	FYA ...	Ribo-seq	TTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
896561	45	CAA ...	QQF ...	Ribo-seq	CAA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
3199823	132	GGC ...	GFW ...	Ribo-seq	GGC		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
896539	63	GGT ...	GKF ...	Ribo-seq	GGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
95591	120	CTG ...	LML ...	Ribo-seq	CTG	weak	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
95589	117	ATG ...	MLK ...	Ribo-seq	ATG	weak	18	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
896543	39	TGT ...	CGK ...	Ribo-seq	TGT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
100027	123	ATG ...	MMS ...	Ribo-seq	ATG		13	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, THP-1
100029	87	TTG ...	LSS ...	Ribo-seq	TTG		15	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
1816525	69	CTG ...	LRV ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative sORF Upstream	HeLa
280976	48	ATG ...	MEI ...	Ribo-seq	ATG		8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, THP-1
523809	60	TTG ...	LGT ...	Ribo-seq	TTG	strong	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, U2OS
901635	48	CAC ...	HPH ...	Ribo-seq	CAC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
275650	48	TTG ...	LDQ ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, LCL, MDA-MB-231, RPE-1, U2OS
95583	99	CTG ...	LSF ...	Ribo-seq	CTG	weak	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
896570	75	ACC ...	TSS ...	Ribo-seq	ACC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
95585	108	ATG ...	MYH ...	Ribo-seq	ATG	moderate	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
275664	42	GTG ...	VSV ...	Ribo-seq	GTG	weak	10	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1816521	42	CTG ...	LAA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1383	75	TTG ...	LQK ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
896547	51	AGT ...	SCA ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
95587	114	TTG ...	LKM ...	Ribo-seq	TTG	moderate	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
896549	30	ACC ...	TKA ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
896565	45	AGA ...	RRN ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1380	33	CTG ...	LEC ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231, THP-1
95579	36	CTG ...	LSY ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, U2OS
896541	42	AAA ...	KLL ...	Ribo-seq	AAA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
95581	42	TTG ...	LYL ...	Ribo-seq	TTG	weak	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
275666	45	TTG ...	LVS ...	Ribo-seq	TTG	strong	11	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1129865	78	CTG ...	LEP ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
896567	66	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
896545	51	ACT ...	TNM ...	Ribo-seq	ACT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
95597	153	GTG ...	VII ...	Ribo-seq	GTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
280986	54	TTG ...	LML ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
901642	57	GTA ...	VPR ...	Ribo-seq	GTA		1	sORFs_org_Human	Overlapping sORF Upstream	Jurkat
280984	51	ATG ...	MLA ...	Ribo-seq	ATG		8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1718348	51	ATG ...	MWE ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231

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