Transcript 281155

Transcript

ID CARD

MetamORF ID

281155

ENST00000422982

Name

ANXA11-203

Strand

Biotype

protein_coding

Start-end positions

80155124-80205572

CDS Start-stop positions

80155853-80172861

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

HGNC:535

Aliases

ANX11,
ANXA11, ENSG00000122359, HGNC:535,
NCBI:311, OFF:ANXA11

Chr 10

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1499700	222	CTG ...	LGQ ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF Upstream	BJ, MM1S, RPE-1
901705	231	ACT ...	TPA ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
1450	96	ATG ...	MSR ...	Ribo-seq	ATG		1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
281159	75	CTG ...	LYD ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, hES, LCL, MM1S, RPE-1, THP-1
281132	138	ATG ...	MKA ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
281157	195	ATG ...	MTF ...	Ribo-seq	ATG		15	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
523915	54	ATG ...	MLP ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
901709	213	GCT ...	AAA ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
1502849	219	CTG ...	LTA ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative sORF Upstream	BJ, MM1S, RPE-1
901707	264	GGC ...	GAA ...	Ribo-seq	GGC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
281154	51	GTG ...	VSG ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative sORF Upstream	BJ, HCT116, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3303223	1518	ATG ...	MSY ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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