Transcript 110831

Transcript

ID CARD

MetamORF ID

110831

ENST00000545801

Name

ANAPC5-222

Strand

Biotype

retained_intron

Start-end positions

121346795-121352327

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

HGNC:15713

Aliases

ANAPC5,
APC5, ENSG00000089053, HGNC:15713,
NCBI:51433, OFF:ANAPC5

Chr 12

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
705235	60	GCC ...	APA ...	Ribo-seq	GCC		1	sORFs_org_Human	Intronic sORF	Jurkat
3232551	171	CTG ...	LGD ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
705225	51	TTT ...	FQI ...	Ribo-seq	TTT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
705245	234	GCG ...	AVL ...	Ribo-seq	GCG		1	sORFs_org_Human	Intronic sORF	Jurkat
705237	66	GCT ...	APA ...	Ribo-seq	GCT		1	sORFs_org_Human	Intronic sORF	Jurkat
705231	42	GAG ...	ESC ...	Ribo-seq	GAG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
3187631	48	CCA ...	PMG ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	Intronic sORF	HEK293
110830	102	TTG ...	LKD ...	Ribo-seq	TTG	moderate	13	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
110833	69	CTG ...	LSK ...	Ribo-seq	CTG	moderate	22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
3232548	72	TTG ...	LKS ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
304998	39	TTG ...	LCT ...	Ribo-seq	TTG	moderate	23	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
705247	270	TTC ...	FGI ...	Ribo-seq	TTC		1	sORFs_org_Human	Intronic sORF	Jurkat
705253	240	CGA ...	REP ...	Ribo-seq	CGA		1	sORFs_org_Human	Intronic sORF	Jurkat
705251	225	CAA ...	QSH ...	Ribo-seq	CAA		1	sORFs_org_Human	Intronic sORF	Jurkat
1739558	36	CTG ...	LEL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
412443	114	GCT ...	AEG ...	Ribo-seq	GCT	strong	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
705241	90	GGA ...	GAA ...	Ribo-seq	GGA		1	sORFs_org_Human	Intronic sORF	Jurkat
412441	105	GAG ...	ELK ...	Ribo-seq	GAG	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
705243	60	CCG ...	PSA ...	Ribo-seq	CCG		1	sORFs_org_Human	Intronic sORF	Jurkat
705233	36	AGA ...	RYY ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1739560	57	ATG ...	MTF ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231
305000	45	ATG ...	MGL ...	Ribo-seq	ATG	moderate	24	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
705239	162	CTC ...	LNQ ...	Ribo-seq	CTC		1	sORFs_org_Human	Intronic sORF	Jurkat
705227	60	TTG ...	LMT ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, Jurkat, MDA-MB-231, RPE-1
1739556	30	CTG ...	LNQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231

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