Transcript 13427 | MetamORF

Transcript

ID CARD

MetamORF ID

13427

ENST00000544314

Name

ANAPC5-219

Strand

Biotype

processed_transcript

Start-end positions

121308358-121335682

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

HGNC:15713

Aliases

ANAPC5,
APC5, ENSG00000089053, HGNC:15713,
NCBI:51433, OFF:ANAPC5

Chr 12

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
110769	54	GTG ...	VPG ...	Ribo-seq	GTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
412432	165	GCA ...	AKV ...	Ribo-seq	GCA	weak	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
110771	84	GTG ...	VAK ...	Ribo-seq	GTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF
13429	111	CTG ...	LDK ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, RPE-1
13465	39	CTG ...	LNL ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HAP1, HEK293
412436	186	ATT ...	ILG ...	Ribo-seq	ATT		1	sORFs_org_Human	ncRNA sORF	HCT116
705192	36	CCC ...	PSH ...	Ribo-seq	CCC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
15133	270	GTG ...	VAK ...	Ribo-seq	GTG		21	sORFs_org_Human	ncRNA sORF	BJ, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
110767	69	GTG ...	VAS ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa, hES, HFF, U2OS
2340749	144	TTG ...	LTA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	ncRNA sORF	HeLa, MDA-MB-231
110762	51	CTG ...	LHQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	ncRNA sORF	HEK293
412434	120	GGG ...	GAI ...	Ribo-seq	GGG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
2340755	189	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
110764	99	CTG ...	LGK ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	ncRNA sORF	HEK293, HFF, RPE-1, THP-1
14066	39	CTG ...	LNL ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	Brain, HEK293, HeLa, hES, RPE-1, U2OS
1739522	222	GTG ...	VLF ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231
14068	54	TTG ...	LRY ...	Ribo-seq	TTG		10	sORFs_org_Human	ncRNA sORF	Brain, HEK293, HeLa, hES, HFF, RPE-1, U2OS
705196	144	CGC ...	RIR ...	Ribo-seq	CGC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
1739529	42	CTG ...	LTG ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	ncRNA sORF	Blood, HeLa
15131	255	GTG ...	VAS ...	Ribo-seq	GTG		21	sORFs_org_Human	ncRNA sORF	BJ, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
705194	108	TAC ...	YHT ...	Ribo-seq	TAC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
13431	129	TTG ...	LAD ...	Ribo-seq	TTG		19	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
2340751	153	TTG ...	LQR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	ncRNA sORF	HeLa, MDA-MB-231
15135	297	CTG ...	LDK ...	Ribo-seq	CTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
14070	111	CTG ...	LIL ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	BJ, Brain, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
110760	39	CTG ...	LPS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	ncRNA sORF	HEK293, RPE-1, THP-1
13468	54	TTG ...	LRY ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
13426	210	CTG ...	LEA ...	Ribo-seq	CTG	strong	19	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2340747	57	GTG ...	VRC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
1739524	228	ATG ...	MCV ...	Ribo-seq	ATG		4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231
2340753	171	ATG ...	MKP ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	ncRNA sORF	HeLa, MDA-MB-231

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