Transcript 97405 | MetamORF

Transcript

ID CARD

MetamORF ID

97405

ENST00000621663

Name

ANAPC16-205

Strand

Biotype

protein_coding

Start-end positions

72216000-72235858

CDS Start-stop positions

72223915-72233116

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

HGNC:26976

Aliases

ANAPC16,
APC16, bA570G20.3, C10orf104,
CENP-27, ENSG00000166295, FLJ33728,
HGNC:26976, NCBI:119504, OFF:ANAPC16

Chr 10

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1816391	54	CTG ...	LEI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
275160	90	CTG ...	LSL ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1717955	135	CTG ...	LTS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Blood
97409	42	CTG ...	LFL ...	Ribo-seq	CTG	moderate	24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
275164	78	CTG ...	LVS ...	Ribo-seq	CTG	strong	23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896034	156	CTC ...	LVV ...	Ribo-seq	CTC		1	sORFs_org_Human	sORF Upstream	Jurkat
896054	33	TCA ...	SPT ...	Ribo-seq	TCA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
901518	90	TGG ...	WFQ ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
404532	90	TGG ...	WIW ...	Ribo-seq	TGG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
404528	147	GAG ...	ERK ...	Ribo-seq	GAG	weak	2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, Jurkat
896047	102	AAG ...	KFC ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
896030	168	CAC ...	HAA ...	Ribo-seq	CAC		2	sORFs_org_Human	sORF Upstream	HEK293, Jurkat
1816389	66	GTG ...	VPG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1816395	39	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
901509	174	CAC ...	HAA ...	Ribo-seq	CAC		1	sORFs_org_Human	sORF Upstream	Jurkat
1499077	102	CTG ...	LAP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, MM1S, RPE-1
901515	108	AAG ...	KFC ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
404526	99	AGT ...	SAK ...	Ribo-seq	AGT		2	sORFs_org_Human	sORF Upstream	HCT116, Jurkat
406108	105	AGT ...	SAK ...	Ribo-seq	AGT		1	sORFs_org_Human	sORF Upstream	HCT116
896052	78	CAG ...	QCL ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
275168	57	TTG ...	LPH ...	Ribo-seq	TTG	moderate	22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896028	39	TGT ...	CWG ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
404530	147	AAT ...	NGC ...	Ribo-seq	AAT		7	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HCT116, HEK293, HeLa, Jurkat, THP-1
901511	162	CTC ...	LVV ...	Ribo-seq	CTC		1	sORFs_org_Human	sORF Upstream	Jurkat
275156	108	GTG ...	VGS ...	Ribo-seq	GTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
404536	30	AGC ...	SWF ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
1717957	39	CTG ...	LYL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	Blood
406110	96	TGG ...	WIW ...	Ribo-seq	TGG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
275158	99	GTG ...	VEV ...	Ribo-seq	GTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
97407	63	CTG ...	LRD ...	Ribo-seq	CTG	moderate	24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
896050	84	TGG ...	WFQ ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
404534	48	TGC ...	CSD ...	Ribo-seq	TGC	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
896032	69	GGT ...	GPR ...	Ribo-seq	GGT	weak	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
275154	111	CTG ...	LVG ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
97404	69	ATG ...	MAL ...	Ribo-seq	ATG	strong	23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
901513	144	GCC ...	ATQ ...	Ribo-seq	GCC		1	sORFs_org_Human	sORF Upstream	Jurkat
901520	84	CAG ...	QCL ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
896056	120	TTA ...	LSP ...	Ribo-seq	TTA	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
1816393	42	TTG ...	LQM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
275152	135	CTG ...	LLH ...	Ribo-seq	CTG	weak	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
275166	69	GTG ...	VSQ ...	Ribo-seq	GTG	weak	22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
275162	84	CTG ...	LDL ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896036	138	GCC ...	ATQ ...	Ribo-seq	GCC		1	sORFs_org_Human	sORF Upstream	Jurkat
275150	153	CTG ...	LLE ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896045	126	CAT ...	HHP ...	Ribo-seq	CAT	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat

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