Transcript 95955 | MetamORF

Transcript

ID CARD

MetamORF ID

95955

ENST00000489386

Name

ALDH18A1-205

Strand

Biotype

processed_transcript

Start-end positions

95625430-95628853

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

HGNC:9722

Aliases

ALDH18A1,
ENSG00000059573, GSAS, HGNC:9722,
NCBI:5832, OFF:ALDH18A1, P5CS,
PYCS, SPG9

Chr 10

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
897653	117	TCT ...	SVV ...	Ribo-seq	TCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
631167	90	TTG ...	LPM ...	Ribo-seq	TTG	weak	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1, THP-1
2300825	42	TTG ...	LWR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231, RPE-1
276809	72	TTG ...	LTA ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	ncRNA sORF	BJ, Blood, LCL, MDA-MB-231
2123958	57	GTG ...	VGM ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	BJ
95965	153	GTG ...	VKA ...	Ribo-seq	GTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
276798	72	CTG ...	LLS ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HFF, LCL, MDA-MB-231, U2OS
95963	135	CTG ...	LGF ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
98014	48	ATG ...	MQS ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, hES, Jurkat, MDA-MB-231, RPE-1
95959	84	GTG ...	VSG ...	Ribo-seq	GTG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
631171	99	CTG ...	LLL ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1, THP-1
98016	51	ATG ...	MMQ ...	Ribo-seq	ATG	weak	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, hES, LCL, MDA-MB-231, RPE-1
3199508	93	AAC ...	NPP ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	HEK293
276796	69	TTG ...	LSS ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HFF, LCL, MDA-MB-231, U2OS
1129021	63	CTG ...	LGT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231, RPE-1
95954	42	CTG ...	LEE ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
897655	117	CAC ...	HFC ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
631169	96	TTG ...	LLL ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231, RPE-1, THP-1
95961	132	TTG ...	LQG ...	Ribo-seq	TTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
95957	57	GTG ...	VEG ...	Ribo-seq	GTG		17	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
98012	36	TTG ...	LIY ...	Ribo-seq	TTG	weak	11	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, hES, LCL, MDA-MB-231, RPE-1, U2OS
276805	48	TTG ...	LEP ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	BJ, HEK293, hES, LCL, MDA-MB-231, RPE-1
276800	84	TTG ...	LQA ...	Ribo-seq	TTG		5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, LCL
631173	108	GTG ...	VAL ...	Ribo-seq	GTG	strong	8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1, THP-1
1133937	81	GTG ...	VTF ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES
276802	96	TTG ...	LHI ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	BJ, HEK293, LCL
897657	123	AGG ...	RWH ...	Ribo-seq	AGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
631165	84	ATG ...	MEP ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1, THP-1

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