Transcript 95972 | MetamORF

Transcript

ID CARD

MetamORF ID

95972

ENST00000483788

Name

ALDH18A1-203

Strand

Biotype

processed_transcript

Start-end positions

95637093-95656609

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

HGNC:9722

Aliases

ALDH18A1,
ENSG00000059573, GSAS, HGNC:9722,
NCBI:5832, OFF:ALDH18A1, P5CS,
PYCS, SPG9

Chr 10

ORFs

54 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
276834	81	CTG ...	LWV ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
98027	69	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
897685	57	CCT ...	PGS ...	Ribo-seq	CCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
631194	126	TTG ...	LSQ ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, RPE-1, THP-1
404883	165	GGT ...	GEE ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	HCT116
1129040	219	CTG ...	LVT ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
897679	111	GTA ...	VSS ...	Ribo-seq	GTA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
524315	135	CTG ...	LQI ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
98041	138	CTG ...	LKH ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, RPE-1, THP-1, U2OS
2678287	33	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	RPE-1
897687	84	CAT ...	HLL ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
98021	246	CTG ...	LQN ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, hES, HFF
631191	90	GTG ...	VGS ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	HEK293, RPE-1, THP-1
98045	48	ATG ...	MYS ...	Ribo-seq	ATG		10	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, MM1S, RPE-1, THP-1
897669	66	TCC ...	SRL ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
897663	180	CTC ...	LSR ...	Ribo-seq	CTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
897683	39	CCG ...	PSS ...	Ribo-seq	CCG		1	sORFs_org_Human	ncRNA sORF	Jurkat
631200	177	TTG ...	LSS ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293, THP-1
897689	72	CCA ...	PAL ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
98033	93	GTG ...	VTR ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	BJ, HEK293, hES
98029	45	GTG ...	VAW ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, MDA-MB-231
897673	93	TCA ...	SDM ...	Ribo-seq	TCA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
1718960	39	ATG ...	MWP ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	ncRNA sORF	Blood, MDA-MB-231
897667	192	ATC ...	ITV ...	Ribo-seq	ATC		1	sORFs_org_Human	ncRNA sORF	Jurkat
524313	117	GTG ...	VTT ...	Ribo-seq	GTG		16	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
897665	45	ACC ...	TPQ ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
98035	96	GTG ...	VVT ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	BJ, HEK293, hES
98023	249	GTG ...	VLQ ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, hES, HFF
897675	93	AGT ...	SHQ ...	Ribo-seq	AGT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
897671	84	TTC ...	FVL ...	Ribo-seq	TTC	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
897677	102	CTT ...	LQS ...	Ribo-seq	CTT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
95971	42	CTG ...	LCS ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, THP-1
98039	117	GTG ...	VVK ...	Ribo-seq	GTG		11	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, HFF, RPE-1, U2OS
95984	108	TTG ...	LYP ...	Ribo-seq	TTG	weak	16	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
98043	30	TTG ...	LVS ...	Ribo-seq	TTG	strong	13	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
276832	45	CTG ...	LGQ ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, RPE-1, THP-1, U2OS
1313411	78	CTG ...	LPW ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
524309	36	GTG ...	VYN ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, hES, THP-1, U2OS
95978	54	CTG ...	LYP ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
95976	33	ATG ...	MAS ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	ncRNA sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
98037	114	GTG ...	VKL ...	Ribo-seq	GTG		11	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HEK293T, HeLa, hES, HFF, U2OS
95980	72	TTG ...	LEQ ...	Ribo-seq	TTG	moderate	12	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HEK293T, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
2678289	45	CTG ...	LPE ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	RPE-1
276830	153	TTG ...	LSI ...	Ribo-seq	TTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, LCL, RPE-1, THP-1, U2OS
276825	42	ATG ...	MPR ...	Ribo-seq	ATG		13	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, LCL, RPE-1, U2OS
98025	63	CTG ...	LGR ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
276822	60	ATG ...	MRS ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HEK293T, LCL, MDA-MB-231
897661	99	GCC ...	AVV ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
633048	39	ATG ...	MDT ...	Ribo-seq	ATG		7	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1
95982	87	ATG ...	MFV ...	Ribo-seq	ATG	moderate	14	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, THP-1
95974	81	TTG ...	LAN ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, LCL, MDA-MB-231
98031	51	ATG ...	MNV ...	Ribo-seq	ATG		6	sORFs_org_Human	ncRNA sORF	BJ, HEK293, MDA-MB-231
897691	108	TGT ...	CGF ...	Ribo-seq	TGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
897681	48	AGA ...	RSR ...	Ribo-seq	AGA		1	sORFs_org_Human	ncRNA sORF	Jurkat

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