Transcript 1610 | MetamORF

Transcript

ID CARD

MetamORF ID

1610

ENST00000371221

Name

ALDH18A1-201

Strand

Biotype

protein_coding

Start-end positions

95605945-95656706

CDS Start-stop positions

95606762-95653377

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:9722

Aliases

ALDH18A1,
ENSG00000059573, GSAS, HGNC:9722,
NCBI:5832, OFF:ALDH18A1, P5CS,
PYCS, SPG9

Chr 10

ORFs

64 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
100236	51	ATG ...	MRL ...	Ribo-seq	ATG		7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, THP-1
901933	147	CCT ...	PGS ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
481431	72	ATG ...	MAA ...	Ribo-seq	ATG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
97988	72	GTG ...	VAA ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
98019	45	ATG ...	MRL ...	Ribo-seq	ATG		7	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293, HeLa, MDA-MB-231, THP-1
1612	180	GTG ...	VGS ...	Ribo-seq	GTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
276773	48	CTG ...	LKW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
897647	129	CGG ...	RSA ...	Ribo-seq	CGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
481440	81	ATG ...	MNV ...	Ribo-seq	ATG		8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HEK293T, HeLa, HFF, MDA-MB-231
1614	231	CTG ...	LQI ...	Ribo-seq	CTG		21	sORFs_org_Human	Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1093836	123	TTG ...	LSP ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
526056	30	ATG ...	MES ...	Ribo-seq	ATG		6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, RPE-1, U2OS
276822	60	ATG ...	MRS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1092929	51	ATG ...	MML ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
276817	54	ATG ...	MSR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
281534	129	TTG ...	LHI ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, LCL
276771	81	TTG ...	LRD ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, LCL, MDA-MB-231, RPE-1
281517	72	ATG ...	MVT ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, LCL
1129971	48	TTG ...	LEP ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
276811	36	ATG ...	MIA ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
98016	51	ATG ...	MMQ ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
281515	60	TTG ...	LDW ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
631165	84	ATG ...	MEP ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
481438	75	GTG ...	VAW ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, MDA-MB-231
2093052	120	TTG ...	LNL ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
1093828	96	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
281538	273	TTG ...	LSS ...	Ribo-seq	TTG		15	sORFs_org_Human	Overlapping sORF Upstream	BJ, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1092915	42	ATG ...	MWI ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
481429	54	ATG ...	MSS ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, MDA-MB-231, RPE-1
95969	72	TTG ...	LSP ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
281528	102	TTG ...	LSS ...	Ribo-seq	TTG		7	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231, RPE-1
1718960	39	ATG ...	MWP ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
281525	111	GTG ...	VPV ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, hES, LCL, MDA-MB-231
95967	63	TTG ...	LST ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
1093834	114	TTG ...	LST ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
95982	87	ATG ...	MFV ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
281519	75	CTG ...	LMV ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, loayza_puch_2016
1092925	42	TTG ...	LSP ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
281521	93	ATG ...	MPA ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL
95954	42	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
897694	264	CGG ...	RDV ...	Ribo-seq	CGG		1	sORFs_org_Human	sORF Upstream	Jurkat
276775	36	CTG ...	LCV ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231, THP-1, U2OS
1129031	30	CTG ...	LSP ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231
2091859	51	GTG ...	VFC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
1093830	99	ATG ...	MLL ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
281530	105	CTG ...	LLS ...	Ribo-seq	CTG		8	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231, RPE-1
481435	96	ATG ...	MPL ...	Ribo-seq	ATG		10	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HEK293T, HeLa, HFF, Jurkat, MDA-MB-231, RPE-1
276819	57	ATG ...	MMS ...	Ribo-seq	ATG	weak	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
2308751	108	CTG ...	LTV ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
901931	129	CCG ...	PSS ...	Ribo-seq	CCG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
481433	90	TTG ...	LTT ...	Ribo-seq	TTG		8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
1093826	93	TTG ...	LSP ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
276813	48	GTG ...	VLK ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
276815	30	ATG ...	MEH ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
1092927	48	ATG ...	MLL ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
897651	144	GAA ...	EQP ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
281532	117	TTG ...	LQA ...	Ribo-seq	TTG		7	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231, RPE-1
1093824	81	CTG ...	LSP ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
3303463	2388	ATG ...	MLS ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
2678291	45	GTG ...	VRT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative sORF Upstream	MM1S, RPE-1
1093832	102	ATG ...	MML ...	Ribo-seq	ATG		7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
281523	105	GTG ...	VCS ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
1718954	45	CTG ...	LLS ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
1609	75	CTG ...	LEE ...	Ribo-seq	CTG		11	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1

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