Transcript 1389 | MetamORF

Transcript

ID CARD

MetamORF ID

1389

ENST00000541550

Name

ADK-206

Strand

Biotype

protein_coding

Start-end positions

74176489-74709299

CDS Start-stop positions

74176873-74708445

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

HGNC:257

Aliases

ADK,
AK, ENSG00000156110, HGNC:257,
NCBI:132, OFF:ADK

Chr 10

ORFs

55 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1388	60	ATG ...	MSS ...	Ribo-seq	ATG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
97628	33	ATG ...	MLI ...	Ribo-seq	ATG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
275699	36	CTG ...	LPL ...	Ribo-seq	CTG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
896599	48	ATA ...	IFS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
523817	33	CTG ...	LWY ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	sORF Upstream	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
896603	33	TGG ...	WTK ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
281005	48	ATG ...	MLV ...	Ribo-seq	ATG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
275694	30	TTG ...	LIW ...	Ribo-seq	TTG	moderate	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
901646	48	GTC ...	VSQ ...	Ribo-seq	GTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3217771	150	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
281009	42	GTG ...	VAL ...	Ribo-seq	GTG		11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
3217768	60	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
901648	54	GAG ...	EKI ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
896601	33	TGG ...	WEI ...	Ribo-seq	TGG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
100034	99	CTG ...	LLK ...	Ribo-seq	CTG		14	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1, THP-1
481380	87	ATG ...	MWM ...	Ribo-seq	ATG		12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, Jurkat, MDA-MB-231, RPE-1
896612	45	AAA ...	KQQ ...	Ribo-seq	AAA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
896593	102	GCT ...	AAR ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
100043	54	CTG ...	LPL ...	Ribo-seq	CTG		17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
97632	42	ATG ...	MYP ...	Ribo-seq	ATG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
896595	39	CAT ...	HDV ...	Ribo-seq	CAT		5	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa, Jurkat, THP-1
281007	45	CTG ...	LVA ...	Ribo-seq	CTG		11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1301421	99	GCC ...	ARA ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ
100041	84	TTG ...	LIY ...	Ribo-seq	TTG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1393	36	CTG ...	LHA ...	Ribo-seq	CTG		12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, RPE-1
275682	66	ATG ...	MLV ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS Overlapping sORF	HCT116, HeLa, Jurkat, LCL, RPE-1
404675	108	GGC ...	GSG ...	Ribo-seq	GGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
275680	39	TTG ...	LEW ...	Ribo-seq	TTG	moderate	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
896606	147	CTG ...	LKP ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, Jurkat
97630	30	TTG ...	LIY ...	Ribo-seq	TTG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
95601	39	CTG ...	LHR ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
404679	54	AGA ...	RCI ...	Ribo-seq	AGA		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
275678	105	GTG ...	VPE ...	Ribo-seq	GTG	weak	8	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HeLa, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
896591	114	GTG ...	VVP ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa, Jurkat, loayza_puch_2016, MDA-MB-231, RPE-1
481382	81	ATG ...	MLI ...	Ribo-seq	ATG		12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
275686	60	GTG ...	VDD ...	Ribo-seq	GTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
275684	63	CTG ...	LVA ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, LCL
95603	42	CTG ...	LNV ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1, U2OS
480594	30	GTG ...	VAL ...	Ribo-seq	GTG	strong	17	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
275688	66	TTG ...	LLL ...	Ribo-seq	TTG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
630795	33	ATG ...	MLL ...	Ribo-seq	ATG	moderate	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
2298915	33	GTG ...	VRT ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	sORF Upstream	MDA-MB-231, RPE-1
100036	96	CTG ...	LKP ...	Ribo-seq	CTG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, Jurkat, MDA-MB-231, RPE-1
100039	87	ATG ...	MLI ...	Ribo-seq	ATG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
896608	138	ATG ...	MWM ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1301423	75	ACG ...	TRA ...	Ribo-seq	ACG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ
404672	78	CGG ...	RTR ...	Ribo-seq	CGG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116
523815	36	TTG ...	LLW ...	Ribo-seq	TTG	weak	18	sORFs_org_Human	sORF Upstream	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
896597	33	GTC ...	VSQ ...	Ribo-seq	GTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
275690	63	CTG ...	LLP ...	Ribo-seq	CTG	weak	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
1391	39	GTG ...	VLH ...	Ribo-seq	GTG		11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
275692	60	CTG ...	LPI ...	Ribo-seq	CTG	weak	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
404670	135	CTG ...	LSR ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HCT116, HeLa, Jurkat, loayza_puch_2016
896610	36	GCC ...	ANR ...	Ribo-seq	GCC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1499529	30	GTG ...	VLA ...	Ribo-seq	GTG	weak	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231

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