Transcript 6532 | MetamORF

Transcript

ID CARD

MetamORF ID

6532

ENST00000534773

Name

ACAT1-212

Strand

Biotype

retained_intron

Start-end positions

108138720-108140171

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAA ...

Genome browsers

UCSC

Gene

HGNC:93

Aliases

ACAT,
ACAT1, ENSG00000075239, HGNC:93,
NCBI:38, OFF:ACAT1, THIL

Chr 11

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
636827	36	GTG ...	VGW ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	Intronic sORF	Blood, HEK293, HEK293T, MDA-MB-231, MM1S, RPE-1, THP-1
912863	54	TGT ...	CSI ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
912869	33	AGG ...	RIN ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
912865	120	GTA ...	VMN ...	Ribo-seq	GTA		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
6531	165	GTG ...	VMV ...	Ribo-seq	GTG		28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
6534	159	GTG ...	VAG ...	Ribo-seq	GTG		28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
912861	144	GAG ...	ESM ...	Ribo-seq	GAG		1	sORFs_org_Human	Intronic sORF	Jurkat
408878	99	CCA ...	PYG ...	Ribo-seq	CCA		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat

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