Transcript 11028 | MetamORF

Transcript

ID CARD

MetamORF ID

11028

ENST00000550033

Name

AAAS-216

Strand

Biotype

retained_intron

Start-end positions

53307738-53309665

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

HGNC:13666

Aliases

AAAS,
ENSG00000094914, HGNC:13666, NCBI:8086,
OFF:AAAS

Chr 12

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
11034	54	GTG ...	VAD ...	Ribo-seq	GTG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
922078	60	CCA ...	PVI ...	Ribo-seq	CCA	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
11030	63	TTG ...	LGE ...	Ribo-seq	TTG	strong	6	sORFs_org_Human	Intronic sORF	HEK293, LCL, U2OS
1095853	87	GTG ...	VQS ...	Ribo-seq	GTG		5	sORFs_org_Human	Intronic sORF	HEK293, HeLa, RPE-1
11032	45	CTG ...	LSE ...	Ribo-seq	CTG		18	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
300081	45	GTG ...	VAY ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HEK293
11027	45	CTG ...	LGP ...	Ribo-seq	CTG		11	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
1095851	69	TTG ...	LWQ ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HEK293
922076	42	CGC ...	RTR ...	Ribo-seq	CGC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
300077	48	GTG ...	VRW ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1
411064	57	GGG ...	GKG ...	Ribo-seq	GGG	weak	1	sORFs_org_Human	Intronic sORF	HCT116
300075	93	TTG ...	LEV ...	Ribo-seq	TTG		4	sORFs_org_Human	Intronic sORF	HEK293, LCL, RPE-1
1210517	105	CTG ...	LTP ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa
11038	90	CTG ...	LLE ...	Ribo-seq	CTG		7	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231
2692507	111	GTG ...	VRE ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	RPE-1
11036	87	CTG ...	LEP ...	Ribo-seq	CTG		7	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231
2963651	87	ATG ...	MVN ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Intronic sORF	hES
1828956	36	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
1095847	54	CTG ...	LRQ ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293

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