Transcript 98842 | MetamORF

Transcript

ID CARD

MetamORF ID

98842

ENST00000369087

Name

TIAL1-202

Strand

Biotype

retained_intron

Start-end positions

119576776-119580782

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:11804

Aliases

ENSG00000151923,
HGNC:11804, NCBI:7073, OFF:TIAL1,
TIAL1, TIAR

Chr 10

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
278686	42	ATG ...	MWL ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
405492	102	TGC ...	CYW ...	Ribo-seq	TGC	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
899446	93	GGT ...	GKE ...	Ribo-seq	GGT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1134606	111	GTG ...	VVK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Intronic sORF	HEK293, hES
98841	138	GTG ...	VNG ...	Ribo-seq	GTG	weak	8	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, HFF, RPE-1
278688	51	TTG ...	LKD ...	Ribo-seq	TTG	weak	12	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
405496	141	TCG ...	SVN ...	Ribo-seq	TCG	strong	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
480958	33	ATG ...	MKV ...	Ribo-seq	ATG	weak	17	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
405494	114	CAT ...	HVV ...	Ribo-seq	CAT	strong	1	sORFs_org_Human	Intronic sORF	HCT116
405498	36	CCA ...	PCH ...	Ribo-seq	CCA	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat

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