Transcript 98557 | MetamORF

Transcript

ID CARD

MetamORF ID

98557

ENST00000343289

Name

NT5C2-201

Strand

Biotype

protein_coding

Start-end positions

103088018-103193306

CDS Start-stop positions

103089672-103174958

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:8022

Aliases

cN-II,
ENSG00000076685, GMP, HGNC:8022,
NCBI:22978, NT5B, NT5C2,
OFF:NT5C2, PNT5, SPG65

Chr 10

ORFs

63 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
405208	42	TTG ...	LIW ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HCT116, HeLa, Jurkat
1719532	33	ATG ...	MIL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa
632238	51	TTG ...	LEK ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, MDA-MB-231, RPE-1, THP-1
277981	45	ATG ...	MGT ...	Ribo-seq	ATG	strong	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1
277989	30	TTG ...	LVL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, LCL, MDA-MB-231, RPE-1
277993	57	GTG ...	VIG ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
631577	39	TTG ...	LEK ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, MDA-MB-231, RPE-1, THP-1
279567	81	TTG ...	LIW ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231, RPE-1
279557	66	TTG ...	LTG ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS Overlapping sORF	HEK293, hES, HFF, LCL, MDA-MB-231
2305424	150	TTG ...	LRR ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa, MDA-MB-231, RPE-1
900449	144	TAC ...	YMS ...	Ribo-seq	TAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
631575	81	GTG ...	VLW ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, RPE-1, THP-1
277975	69	GTG ...	VTC ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, LCL, MDA-MB-231
632240	72	ATG ...	MHG ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231, RPE-1, THP-1
279559	69	CTG ...	LLT ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS Overlapping sORF	HEK293, hES, HFF, LCL, MDA-MB-231
1135025	42	TTG ...	LLP ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
2302522	30	ATG ...	MNQ ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1
277970	81	ATG ...	MRW ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
2902867	36	ATG ...	MSG ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
898656	33	TCC ...	SRH ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2302526	81	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
279549	141	ATG ...	MSG ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, LCL, MDA-MB-231
2302524	72	ATG ...	MQH ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
279569	87	TTG ...	LVL ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231, RPE-1
279545	48	ATG ...	MSV ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, LCL, MDA-MB-231
631581	42	CTG ...	LGA ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, RPE-1, THP-1
900455	42	GAT ...	DCC ...	Ribo-seq	GAT		1	sORFs_org_Human	sORF Upstream	Jurkat
277987	33	TTG ...	LSL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
279547	63	TTG ...	LTA ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, LCL, MDA-MB-231, RPE-1
2305399	78	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
1983567	42	ATG ...	MET ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	HeLa, hES, MDA-MB-231, RPE-1
631579	60	ATG ...	MHG ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, MDA-MB-231, THP-1
279565	66	TTG ...	LLM ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231, RPE-1, THP-1
1719534	39	TTG ...	LLM ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa
98556	42	ATG ...	MQQ ...	Ribo-seq	ATG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
898665	33	ATA ...	ICL ...	Ribo-seq	ATA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
405210	81	GAT ...	DCC ...	Ribo-seq	GAT		2	sORFs_org_Human	Alternative sORF Upstream	HCT116, Jurkat
632246	93	TTG ...	LAI ...	Ribo-seq	TTG		6	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
898668	63	CCT ...	PGV ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
279555	135	TTG ...	LVP ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, LCL, MDA-MB-231
1134360	36	TTG ...	LLP ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
279553	108	ATG ...	MVS ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, LCL, MDA-MB-231
2302546	66	TTG ...	LAI ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, RPE-1
279551	162	CTG ...	LNS ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, LCL, MDA-MB-231
279563	60	ATG ...	MIL ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231, RPE-1, THP-1
1500951	36	GTG ...	VAP ...	Ribo-seq	GTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, MDA-MB-231
2302533	30	TTG ...	LEI ...	Ribo-seq	TTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, MDA-MB-231, RPE-1
277983	63	GTG ...	VKQ ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1
898650	90	CAT ...	HGH ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
632242	66	TTG ...	LTS ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
277979	75	TTG ...	LVP ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
632236	81	ATG ...	MLT ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, THP-1
2305397	69	ATG ...	MQH ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
277972	57	CTG ...	LNS ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231, RPE-1
3218605	48	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
898648	66	CCT ...	PAV ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
277977	81	CTG ...	LIR ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, LCL, MDA-MB-231
277968	63	TTG ...	LPP ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
279561	72	ATG ...	MLL ...	Ribo-seq	ATG		6	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, hES, HFF, LCL, MDA-MB-231
898660	39	GAA ...	ETS ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
277991	39	ATG ...	MSP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, hES, LCL, MDA-MB-231
277985	48	ATG ...	MPM ...	Ribo-seq	ATG	weak	7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
2302528	84	ATG ...	MLT ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231

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