Transcript 9785 | MetamORF

Transcript

ID CARD

MetamORF ID

9785

ENST00000475350

Name

PPIE-210

Strand

Biotype

nonsense_mediated_decay

Start-end positions

39738908-39753716

CDS Start-stop positions

-39740258

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

HGNC:9258

Aliases

CyP-33,
ENSG00000084072, HGNC:9258, MGC111222,
MGC3736, NCBI:10450, OFF:PPIE,
PPIE

Chr 1

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
918716	138	CCA ...	PSM ...	Ribo-seq	CCA		1	sORFs_org_Human	NMD sORF	Jurkat
9784	36	CTG ...	LAQ ...	Ribo-seq	CTG	strong	8	sORFs_org_Human	NMD sORF	Blood, HEK293, HeLa, MDA-MB-231, THP-1
641298	231	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Human	NMD sORF	THP-1
641336	33	ATG ...	MWC ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	NMD sORF	Blood, MDA-MB-231, THP-1
918713	225	CGC ...	RII ...	Ribo-seq	CGC		1	sORFs_org_Human	NMD sORF	Jurkat
918720	129	GGA ...	GRS ...	Ribo-seq	GGA		1	sORFs_org_Human	NMD sORF	Jurkat
641329	42	ATG ...	MAS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	NMD sORF	BJ, Blood, MDA-MB-231, RPE-1, THP-1
918754	171	GCC ...	ANS ...	Ribo-seq	GCC		1	sORFs_org_Human	NMD sORF	Jurkat
107035	132	CTG ...	LTC ...	Ribo-seq	CTG		19	sORFs_org_Human	NMD sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1
298942	84	ATG ...	MVV ...	Ribo-seq	ATG		5	sORFs_org_Human	NMD sORF	Blood, HeLa, LCL, THP-1
107021	273	CTG ...	LCT ...	Ribo-seq	CTG		9	sORFs_org_Human	NMD sORF	HEK293, HeLa, hES, HFF, THP-1
107044	90	GTG ...	VFG ...	Ribo-seq	GTG		4	sORFs_org_Human	NMD sORF	HEK293, hES, HFF
298940	87	CTG ...	LMV ...	Ribo-seq	CTG		5	sORFs_org_Human	NMD sORF	Blood, HeLa, LCL, THP-1
298956	69	CTG ...	LAG ...	Ribo-seq	CTG	strong	12	sORFs_org_Human	NMD sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
107037	108	CTG ...	LDG ...	Ribo-seq	CTG		10	sORFs_org_Human	NMD sORF	HAP1, HEK293, HeLa, hES, HFF
298954	63	GTG ...	VTR ...	Ribo-seq	GTG	weak	8	sORFs_org_Human	NMD sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
107039	93	GTG ...	VVF ...	Ribo-seq	GTG		6	sORFs_org_Human	NMD sORF	HEK293, HeLa, hES, HFF
410693	60	ACA ...	TRQ ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	NMD sORF	HCT116
410695	54	CAG ...	QTG ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	NMD sORF	HCT116
9825	33	GTG ...	VII ...	Ribo-seq	GTG	moderate	18	sORFs_org_Human	NMD sORF	Blood, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, RPE-1, THP-1

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