Transcript 9780 | MetamORF

Transcript

ID CARD

MetamORF ID

9780

ENST00000539885

Name

NCAPD2-209

Strand

Biotype

processed_transcript

Start-end positions

6529260-6530730

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:24305

Aliases

CAP-D2,
CNAP1, ENSG00000010292, hCAP-D2,
HGNC:24305, KIAA0159, NCAPD2,
NCBI:9918, OFF:NCAPD2

Chr 12

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1301838	108	CTT ...	LRA ...	Ribo-seq	CTT		1	sORFs_org_Human	ncRNA sORF	BJ
1010608	60	CTG ...	LCQ ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293
535893	105	CTG ...	LQT ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, hES, THP-1, U2OS
296764	117	GTG ...	VCH ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
296766	72	TTG ...	LTI ...	Ribo-seq	TTG	weak	13	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1010606	69	GTG ...	VEK ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293
296761	147	CTG ...	LSG ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
3201416	249	AAT ...	NFD ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	HEK293
918797	51	CGG ...	RFR ...	Ribo-seq	CGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1301836	102	CCC ...	PSQ ...	Ribo-seq	CCC	weak	1	sORFs_org_Human	ncRNA sORF	BJ
9779	42	CTG ...	LCV ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, LCL, THP-1
309280	267	CTG ...	LGH ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, LCL, RPE-1, U2OS
918799	132	GAG ...	ETW ...	Ribo-seq	GAG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
1733867	36	ATG ...	MSP ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
484199	42	GTG ...	VSA ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HEK293T, THP-1
918801	276	GAG ...	ERG ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
543735	273	CTG ...	LAL ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, RPE-1, U2OS
296768	63	TTG ...	LTV ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
918805	213	TCC ...	SIF ...	Ribo-seq	TCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1010604	72	CTG ...	LVE ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293
1209469	54	TTG ...	LET ...	Ribo-seq	TTG	strong	7	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
543738	282	ATG ...	MAE ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	HEK293, U2OS
918803	219	GAT ...	DES ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat

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