Transcript 97464 | MetamORF

Transcript

ID CARD

MetamORF ID

97464

ENST00000394847

Name

ANXA7-203

Strand

Biotype

protein_coding

Start-end positions

73396520-73408407

CDS Start-stop positions

-73400856

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

HGNC:545

Aliases

ANX7,
ANXA7, ENSG00000138279, HGNC:545,
NCBI:310, OFF:ANXA7

Chr 10

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
97468	198	CTG ...	LVS ...	Ribo-seq	CTG		14	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
630653	78	CTG ...	LEA ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	Blood, HAP1, RPE-1, THP-1
896284	51	TGG ...	WRT ...	Ribo-seq	TGG	weak	3	sORFs_org_Human	sORF	HeLa, Jurkat, THP-1
97470	228	CTG ...	LQV ...	Ribo-seq	CTG		14	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
896298	132	CCC ...	PNR ...	Ribo-seq	CCC		1	sORFs_org_Human	sORF	Jurkat
933977	138	TTG ...	LES ...	Ribo-seq	TTG		4	sORFs_org_Human	sORF	Brain, HeLa, HFF, MM1S
630661	129	GTG ...	VAT ...	Ribo-seq	GTG		12	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
896292	108	GCT ...	ATL ...	Ribo-seq	GCT		1	sORFs_org_Human	sORF	Jurkat
97463	153	GTG ...	VPT ...	Ribo-seq	GTG		14	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
630659	114	CTG ...	LEA ...	Ribo-seq	CTG		12	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
896296	42	TCC ...	SSN ...	Ribo-seq	TCC	weak	1	sORFs_org_Human	sORF	Jurkat
2419854	123	GTG ...	VEQ ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	HeLa, HFF
896286	60	TGG ...	WLS ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	sORF	Jurkat
100000	117	TTG ...	LLQ ...	Ribo-seq	TTG		19	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
1202209	63	GTG ...	VPH ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	HAP1, hES
100002	120	TTG ...	LLL ...	Ribo-seq	TTG		19	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
630657	102	CTG ...	LRL ...	Ribo-seq	CTG		10	sORFs_org_Human	sORF	BJ, Blood, HAP1, HeLa, hES, HFF, MM1S, RPE-1, THP-1
630651	66	CTG ...	LVP ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HAP1, RPE-1, THP-1
933975	108	CTG ...	LGI ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	Brain, HeLa, HFF
896288	36	ACA ...	TAR ...	Ribo-seq	ACA		1	sORFs_org_Human	sORF	Jurkat
896282	42	GAT ...	DAF ...	Ribo-seq	GAT	strong	1	sORFs_org_Human	sORF	Jurkat
630655	96	CTG ...	LEV ...	Ribo-seq	CTG		9	sORFs_org_Human	sORF	BJ, Blood, HAP1, HeLa, hES, MM1S, RPE-1, THP-1
97466	177	GTG ...	VAF ...	Ribo-seq	GTG		13	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
896280	33	TCA ...	SVS ...	Ribo-seq	TCA	moderate	1	sORFs_org_Human	sORF	Jurkat
896294	93	TGG ...	WRL ...	Ribo-seq	TGG		1	sORFs_org_Human	sORF	Jurkat
896290	42	TGC ...	CPT ...	Ribo-seq	TGC		1	sORFs_org_Human	sORF	Jurkat

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