Transcript 9727 | MetamORF

Transcript

ID CARD

MetamORF ID

9727

ENST00000538600

Name

NCAPD2-206

Strand

Biotype

processed_transcript

Start-end positions

6521920-6523314

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

HGNC:24305

Aliases

CAP-D2,
CNAP1, ENSG00000010292, hCAP-D2,
HGNC:24305, KIAA0159, NCAPD2,
NCBI:9918, OFF:NCAPD2

Chr 12

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9731	177	GTG ...	VMV ...	Ribo-seq	GTG		19	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
106147	81	GTG ...	VLN ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF, RPE-1, THP-1
106139	141	CTG ...	LQD ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HEK293, HeLa, hES, HFF, U2OS
9737	123	CTG ...	LPL ...	Ribo-seq	CTG		19	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
9729	192	GTG ...	VIE ...	Ribo-seq	GTG		20	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
9733	144	CTG ...	LFG ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
2331312	57	ATG ...	MPT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
410185	135	GAT ...	DAY ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	HCT116
918784	60	ATT ...	IWG ...	Ribo-seq	ATT		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
106137	153	CTG ...	LVQ ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, U2OS
9735	135	GTG ...	VRR ...	Ribo-seq	GTG		19	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
106135	168	GTG ...	VKQ ...	Ribo-seq	GTG		16	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HeLa, hES, HFF, Jurkat, RPE-1, U2OS
9726	201	GTG ...	VQE ...	Ribo-seq	GTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
918786	75	AAT ...	NAY ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	Jurkat

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