Transcript 9677 | MetamORF

Transcript

ID CARD

MetamORF ID

9677

ENST00000539084

Name

NCAPD2-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

6494099-6531476

CDS Start-stop positions

6495099-6510671

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

HGNC:24305

Aliases

CAP-D2,
CNAP1, ENSG00000010292, hCAP-D2,
HGNC:24305, KIAA0159, NCAPD2,
NCBI:9918, OFF:NCAPD2

Chr 12

ORFs

72 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9693	93	TTG ...	LDI ...	Ribo-seq	TTG		11	sORFs_org_Human	Downstream NMD sORF	Flp-In_T-REx-293, guo_2014, HEK293, HeLa, hES
3319072	246	ATG ...	MAP ...	Predicted Ribo-seq	ATG		2	Mackowiak2015 Johnstone2016	CDS NMD sORF	Brain_tumor, HEK293, HeLa, HFF
106096	75	CTG ...	LPF ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
639430	30	ATG ...	MPS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF
1320799	255	GTG ...	VLQ ...	Ribo-seq	GTG		2	sORFs_org_Human	Downstream NMD sORF	HEK293, HFF
2549904	75	ATG ...	MAM ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa
1320846	228	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
1320803	228	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Human	Downstream NMD sORF	HEK293
918807	66	GAA ...	EDE ...	Ribo-seq	GAA	strong	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
9681	90	TTG ...	LKS ...	Ribo-seq	TTG		23	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
9676	114	CTG ...	LPL ...	Ribo-seq	CTG		24	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1733821	186	ATG ...	MLC ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, MDA-MB-231
2331288	141	GTG ...	VAI ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa, MDA-MB-231
918751	108	ACA ...	TQL ...	Ribo-seq	ACA		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
296702	81	TTG ...	LIC ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS NMD Overlapping sORF	HeLa, LCL, THP-1
9782	84	TTG ...	LDG ...	Ribo-seq	TTG		16	sORFs_org_Human	Downstream NMD sORF	BJ, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, hES, HFF, RPE-1, U2OS
106102	90	CTG ...	LGR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, hES, LCL, MDA-MB-231, THP-1
1209417	81	ATG ...	MLC ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HeLa
918743	36	CAT ...	HLP ...	Ribo-seq	CAT		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
2345507	66	ATG ...	MPT ...	Ribo-seq	ATG		1	Johnstone2016	Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF
2549906	69	ATG ...	MMS ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
2549908	66	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
1995743	30	TTG ...	LWT ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HeLa, HFF, MDA-MB-231
9691	39	CTG ...	LQH ...	Ribo-seq	CTG		21	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
1050145	57	TTG ...	LRP ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HAP1, HEK293, hES, HFF, MDA-MB-231
918793	96	TTG ...	LLK ...	Ribo-seq	TTG		2	sORFs_org_Human	Downstream NMD sORF	HEK293, HFF
2331334	39	CTG ...	LQL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
296728	54	ATG ...	MLT ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF
484206	39	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293T
1301840	69	ACA ...	TED ...	Ribo-seq	ACA	strong	2	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HEK293
9687	48	CTG ...	LSI ...	Ribo-seq	CTG		19	sORFs_org_Human	InCDS NMD Overlapping sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
9760	117	CTG ...	LEK ...	Ribo-seq	CTG		7	sORFs_org_Human	Downstream NMD sORF	HEK293, HeLa, hES, HFF
2331273	42	TTG ...	LTG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
410164	36	GCC ...	AGI ...	Ribo-seq	GCC		2	sORFs_org_Human	Alternative NMD sORF Upstream	HCT116, HEK293
918749	114	CTT ...	LLT ...	Ribo-seq	CTT		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
2549910	54	TTG ...	LCG ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
1140136	78	CTG ...	LWN ...	Ribo-seq	CTG		2	sORFs_org_Human	Downstream NMD sORF	HEK293
1521367	54	ATG ...	MLV ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF
918745	57	CAG ...	QGP ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
9683	75	GTG ...	VNQ ...	Ribo-seq	GTG		22	sORFs_org_Human	InCDS NMD Overlapping sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
9685	60	GTG ...	VQE ...	Ribo-seq	GTG		21	sORFs_org_Human	InCDS NMD Overlapping sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS
296704	33	CTG ...	LAS ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231, RPE-1
1826549	39	CTG ...	LVD ...	Ribo-seq	CTG		1	sORFs_org_Human	Downstream NMD sORF	HeLa
9689	48	CTG ...	LAM ...	Ribo-seq	CTG		20	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2331312	57	ATG ...	MPT ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF
308581	69	ATG ...	MPR ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF
1733823	183	CTG ...	LCW ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, MDA-MB-231
1320795	279	GTG ...	VLA ...	Ribo-seq	GTG		2	sORFs_org_Human	Downstream NMD sORF	HEK293, HFF
639462	69	CTG ...	LRL ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231, THP-1
639419	36	CTG ...	LLC ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, THP-1
484204	117	TTG ...	LSH ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293T, MDA-MB-231
918809	42	ACT ...	TPI ...	Ribo-seq	ACT	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2345485	195	ATG ...	MLC ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF
106100	33	TTG ...	LIL ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, RPE-1
1320797	276	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Human	Downstream NMD sORF	HEK293, HFF
918741	42	ATC ...	IKH ...	Ribo-seq	ATC		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
1733867	36	ATG ...	MSP ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF
2331258	39	ATG ...	MSS ...	Ribo-seq	ATG	weak	4	sORFs_org_Human Johnstone2016	Alternative InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
9679	93	TTG ...	LLK ...	Ribo-seq	TTG		22	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1320831	117	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Human	Downstream NMD sORF	HEK293
1320801	252	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Human	Downstream NMD sORF	HEK293
918747	30	ATA ...	ILS ...	Ribo-seq	ATA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
1320782	261	CTG ...	LDD ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	HEK293
1209419	78	TTG ...	LCK ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HeLa
9758	129	CTG ...	LFT ...	Ribo-seq	CTG		7	sORFs_org_Human	Downstream NMD sORF	HEK293, HeLa, hES, HFF
484202	123	ATG ...	MTL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293T, MDA-MB-231
2331271	48	ATG ...	MAL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Alternative Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2331336	33	CTG ...	LLH ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
1733869	39	CTG ...	LSY ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1
918739	54	GAG ...	EVL ...	Ribo-seq	GAG		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
484183	42	CTG ...	LTA ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative NMD sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
1826551	36	GTG ...	VDP ...	Ribo-seq	GTG		1	sORFs_org_Human	Downstream NMD sORF	HeLa

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