Transcript 96523 | MetamORF

Transcript

ID CARD

MetamORF ID

96523

ENST00000602395

Name

COMMD3-BMI1-206

Strand

Biotype

retained_intron

Start-end positions

22318301-22326521

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:48326

Aliases

COMMD3-BMI1,
ENSG00000269897, HGNC:48326, NCBI:100532731,
OFF:COMMD3-BMI1

Chr 10

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1128426	60	TTG ...	LLC ...	Ribo-seq	TTG		6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa
1815400	39	CTG ...	LKG ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
894104	30	AGC ...	SME ...	Ribo-seq	AGC		1	sORFs_org_Human	Intronic sORF	Jurkat
894106	48	TTC ...	FEK ...	Ribo-seq	TTC		1	sORFs_org_Human	Intronic sORF	Jurkat
273458	36	TTG ...	LAL ...	Ribo-seq	TTG		11	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
96529	54	GTG ...	VGK ...	Ribo-seq	GTG		25	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
894100	57	GAT ...	DVS ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
96522	30	ATG ...	MFL ...	Ribo-seq	ATG	weak	17	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
96525	42	TTG ...	LEY ...	Ribo-seq	TTG		5	sORFs_org_Human	Intronic sORF	guo_2014, HEK293, HeLa
96527	57	TTG ...	LVG ...	Ribo-seq	TTG		25	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
894110	102	GTG ...	VHF ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	Jurkat
894102	69	ACT ...	TDS ...	Ribo-seq	ACT		1	sORFs_org_Human	Intronic sORF	Jurkat
894108	129	TGC ...	CLQ ...	Ribo-seq	TGC		1	sORFs_org_Human	Intronic sORF	Jurkat
273460	57	TTG ...	LCY ...	Ribo-seq	TTG		9	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, LCL, THP-1
894098	60	TCT ...	SPS ...	Ribo-seq	TCT		1	sORFs_org_Human	Intronic sORF	Jurkat
894096	63	ATC ...	ISP ...	Ribo-seq	ATC		1	sORFs_org_Human	Intronic sORF	Jurkat

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