Transcript 95943 | MetamORF

Transcript

ID CARD

MetamORF ID

95943

ENST00000493949

Name

PDLIM1-205

Strand

Biotype

processed_transcript

Start-end positions

95263876-95273406

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

HGNC:2067

Aliases

CLIM1,
CLP-36, CLP36, ENSG00000107438,
hCLIM1, HGNC:2067, NCBI:9124,
OFF:PDLIM1, PDLIM1

Chr 10

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
897624	198	CGT ...	RHP ...	Ribo-seq	CGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
97984	30	CTG ...	LNI ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
897618	75	AAT ...	NIS ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
897616	93	CTC ...	LQL ...	Ribo-seq	CTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
95945	63	TTG ...	LEA ...	Ribo-seq	TTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
276766	30	ATG ...	MYW ...	Ribo-seq	ATG	weak	14	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HCT116, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
95942	63	CTG ...	LVS ...	Ribo-seq	CTG	strong	22	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
897628	240	GAA ...	EHK ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
897626	216	GTG ...	VTE ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	Jurkat
897622	189	TAC ...	YKM ...	Ribo-seq	TAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
897630	60	GAC ...	DSH ...	Ribo-seq	GAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
276768	54	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, LCL
897620	180	CAC ...	HNR ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
897614	60	AAC ...	NNA ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
404878	117	ATT ...	IGD ...	Ribo-seq	ATT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
897632	105	ACA ...	TLG ...	Ribo-seq	ACA		1	sORFs_org_Human	ncRNA sORF	Jurkat

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