Transcript 9571 | MetamORF

Transcript

ID CARD

MetamORF ID

9571

ENST00000544931

Name

RAD51AP1-214

Strand

Biotype

processed_transcript

Start-end positions

4550515-4559682

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

HGNC:16956

Aliases

ENSG00000111247,
HGNC:16956, NCBI:10635, OFF:RAD51AP1,
PIR51, RAD51AP1

Chr 12

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
105997	165	TTG ...	LPK ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	HEK293, hES
9579	54	TTG ...	LSR ...	Ribo-seq	TTG	moderate	18	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, THP-1, U2OS
296546	36	GTG ...	VRV ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	ncRNA sORF	BJ, Blood, HeLa, LCL, MDA-MB-231
918558	57	TGT ...	CEV ...	Ribo-seq	TGT	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
918560	30	CCT ...	PLH ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
410131	33	GGT ...	GKL ...	Ribo-seq	GGT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
9570	102	CTG ...	LVV ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2331074	75	CTG ...	LPS ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES, MDA-MB-231
918556	123	CCA ...	PLE ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1320667	96	GTG ...	VKV ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES
9573	99	GTG ...	VVV ...	Ribo-seq	GTG	moderate	19	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
918551	33	ATG ...	MLW ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	Blood, Jurkat
1733710	36	TTG ...	LGK ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	Blood
296544	45	CTG ...	LIF ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231
9577	87	GTG ...	VKS ...	Ribo-seq	GTG	weak	19	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
296554	39	CTG ...	LEV ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, LCL, MDA-MB-231
918554	138	GAT ...	DTT ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
105999	147	CTG ...	LSS ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293, hES
296540	57	CTG ...	LRM ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231
296542	51	ATG ...	MIL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231
2331072	84	CTG ...	LLQ ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES, MDA-MB-231
105995	207	GTG ...	VDS ...	Ribo-seq	GTG		8	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES
296536	66	GTG ...	VKI ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
9575	93	GTG ...	VSV ...	Ribo-seq	GTG	moderate	18	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
296548	30	GTG ...	VRI ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231

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