Transcript 95667 | MetamORF

Transcript

ID CARD

MetamORF ID

95667

ENST00000473588

Name

POLR3A-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

78002197-78019252

CDS Start-stop positions

78007840-

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

HGNC:30074

Aliases

ENSG00000148606,
HGNC:30074, hRPC155, NCBI:11128,
OFF:POLR3A, POLR3A, RPC1,
RPC155

Chr 10

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
896654	171	CTG ...	LWT ...	Ribo-seq	CTG		2	sORFs_org_Human	NMD sORF	hES, Jurkat
896650	276	GGA ...	GTL ...	Ribo-seq	GGA		1	sORFs_org_Human	NMD sORF	Jurkat
95666	30	GTG ...	VMS ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	NMD sORF	HEK293
896646	225	GGT ...	GDV ...	Ribo-seq	GGT		1	sORFs_org_Human	NMD sORF	Jurkat
2299073	69	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	MDA-MB-231
896648	48	AGA ...	RCH ...	Ribo-seq	AGA		1	sORFs_org_Human	NMD sORF	Jurkat
2299071	36	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Human	NMD sORF	MDA-MB-231
275748	33	CTG ...	LWQ ...	Ribo-seq	CTG		3	sORFs_org_Human	NMD sORF	Blood, HEK293, LCL
95669	39	TTG ...	LGS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	NMD sORF	HEK293
896644	183	GAG ...	ELL ...	Ribo-seq	GAG		1	sORFs_org_Human	NMD sORF	Jurkat
896656	162	GAC ...	DTF ...	Ribo-seq	GAC		1	sORFs_org_Human	NMD sORF	Jurkat
1499599	33	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	BJ
896652	96	ACC ...	TKG ...	Ribo-seq	ACC		1	sORFs_org_Human	NMD sORF	Jurkat

Export data