Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

95523

ID

ENST00000478896

Name

VCL-205

Strand

+

Biotype

processed_transcript

Start-end positions

73998116-74105293

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

AGT ...

Gene

ID

HGNC:12665

Aliases

ENSG00000035403,
HGNC:12665, NCBI:7414, OFF:VCL,
VCL


Chr 10

ORFs

150 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

95537 36

TTG ...

LVT ...

Ribo-seq
TTG 23 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1, U2OS
896467 87

GGA ...

GIL ...

Ribo-seq
GGA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
97589 99

TTG ...

LKT ...

Ribo-seq
TTG 13 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, U2OS
2123708 42

ATG ...

MPG ...

Ribo-seq
ATG 1 sORFs_org_Human
    ncRNA
    sORF
BJ
2419947 72

TTG ...

LNY ...

Ribo-seq
TTG 1 sORFs_org_Human
    ncRNA
    sORF
HFF
275590 75

ATG ...

MKL ...

Ribo-seq
ATG 19 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
U2OS
1202295 39

ATG ...

MTF ...

Ribo-seq
ATG 11 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HeLa, hES, HFF,
MDA-MB-231, RPE-1
896473 144

CAA ...

QLT ...

Ribo-seq
CAA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
95554 63

CTG ...

LLA ...

Ribo-seq
CTG 20 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, U2OS
275610 72

TTG ...

LQI ...

Ribo-seq
TTG 18 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
loayza_puch_2016, MDA-MB-231, RPE-1,
U2OS
896477 135

GCC ...

AIR ...

Ribo-seq
GCC 2 sORFs_org_Human
    ncRNA
    sORF
HEK293, Jurkat
97567 171

GTG ...

VAT ...

Ribo-seq
GTG 22 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, THP-1,
U2OS
275627 36

TTG ...

LSG ...

Ribo-seq
TTG 8 sORFs_org_Human
    ncRNA
    sORF
BJ, HEK293, HeLa,
hES, LCL, RPE-1,
U2OS
2420008 183

CTG ...

LWP ...

Ribo-seq
CTG 1 sORFs_org_Human
    ncRNA
    sORF
HFF
2420011 96

CTG ...

LGL ...

Ribo-seq
CTG 1 sORFs_org_Human
    ncRNA
    sORF
HFF
1046416 165

CTG ...

LEA ...

Ribo-seq
CTG 1 sORFs_org_Human
    ncRNA
    sORF
guo_2014
97597 48

TTG ...

LVL ...

Ribo-seq
TTG 15 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, U2OS
275614 57

GTG ...

VDR ...

Ribo-seq
GTG 16 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, U2OS
896475 51

ATT ...

IGL ...

Ribo-seq
ATT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
95522 78

TTG ...

LHQ ...

Ribo-seq
TTG 22 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
THP-1, U2OS
896499 189

GAA ...

ERD ...

Ribo-seq
GAA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
1982414 42

TTG ...

LSL ...

Ribo-seq
TTG 2 sORFs_org_Human
    ncRNA
    sORF
HeLa, RPE-1
97571 150

CTG ...

LQT ...

Ribo-seq
CTG 22 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, THP-1,
U2OS
896519 66

CAA ...

QDS ...

Ribo-seq
CAA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
896513 192

GGG ...

GPY ...

Ribo-seq
GGG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
275594 60

TTG ...

LVN ...

Ribo-seq
TTG 19 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
U2OS
95558 54

GTG ...

VAA ...

Ribo-seq
GTG 18 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, U2OS
896507 69

GAA ...

EPA ...

Ribo-seq
GAA 2 sORFs_org_Human
    ncRNA
    sORF
HEK293, Jurkat
1046437 123

CTG ...

LAA ...

Ribo-seq
CTG 7 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014, HEK293,
hES, HFF
523733 51

ATG ...

MCS ...

Ribo-seq
ATG 18 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, THP-1, U2OS
97547 87

GTG ...

VML ...

Ribo-seq
GTG 16 sORFs_org_Human
    ncRNA
    sORF
BJ, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293, HeLa,
hES, HFF, Jurkat,
RPE-1, U2OS
97581 144

CTG ...

LTA ...

Ribo-seq
CTG 11 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014, HEK293,
HeLa, hES, HFF,
RPE-1
97563 243

GTG ...

VAM ...

Ribo-seq
GTG 7 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014, HEK293,
HEK293T, hES, HFF
1046412 201

GTG ...

VLT ...

Ribo-seq
GTG 2 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014
896505 213

GGG ...

GKG ...

Ribo-seq
GGG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
896528 96

AAA ...

KTI ...

Ribo-seq
AAA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
275588 72

GTG ...

VCY ...

Ribo-seq
GTG 10 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014, HEK293,
HeLa, hES, HFF,
LCL, U2OS
95543 36

TTG ...

LWP ...

Ribo-seq
TTG 11 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HEK293,
HeLa, HFF, MDA-MB-231,
RPE-1, U2OS
896515 36

ATC ...

IFS ...

Ribo-seq
ATC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
896493 87

CAT ...

HCK ...

Ribo-seq
CAT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
275562 42

TTG ...

LEK ...

Ribo-seq
TTG strong 9 sORFs_org_Human
    ncRNA
    sORF
BJ, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1
896456 69

GCT ...

ACP ...

Ribo-seq
GCT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
97593 75

GTG ...

VLR ...

Ribo-seq
GTG 12 sORFs_org_Human
    ncRNA
    sORF
Blood, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
U2OS
896464 33

TTA ...

LLS ...

Ribo-seq
TTA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
97591 78

TTG ...

LVL ...

Ribo-seq
TTG 11 sORFs_org_Human
    ncRNA
    sORF
Blood, HAP1, HEK293,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, U2OS
896532 96

GGA ...

GRH ...

Ribo-seq
GGA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
896481 42

GGG ...

GQM ...

Ribo-seq
GGG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
275606 87

ATG ...

MCR ...

Ribo-seq
ATG 15 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, U2OS
896458 54

CAG ...

QLR ...

Ribo-seq
CAG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
275617 120

TTG ...

LMR ...

Ribo-seq
TTG 12 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, U2OS
404642 129

ATT ...

IDE ...

Ribo-seq
ATT 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
275596 57

GTG ...

VNS ...

Ribo-seq
GTG 19 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
U2OS
896460 45

TGC ...

CFS ...

Ribo-seq
TGC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
896511 216

CAT ...

HRL ...

Ribo-seq
CAT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
275612 60

ATG ...

MVD ...

Ribo-seq
ATG 18 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, U2OS
275599 48

GTG ...

VQA ...

Ribo-seq
GTG 16 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, U2OS
95529 81

TTG ...

LEY ...

Ribo-seq
TTG 24 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1, U2OS
896522 75

ACT ...

TPI ...

Ribo-seq
ACT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
896489 30

AAA ...

KMQ ...

Ribo-seq
AAA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
275577 159

TTG ...

LNT ...

Ribo-seq
TTG 4 sORFs_org_Human
    ncRNA
    sORF
BJ, HFF, LCL,
RPE-1
275566 84

TTG ...

LRM ...

Ribo-seq
TTG 16 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, U2OS
1046414 186

GTG ...

VEN ...

Ribo-seq
GTG 2 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014
896526 75

ATG ...

MRL ...

Ribo-seq
ATG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
95539 63

CTG ...

LCR ...

Ribo-seq
CTG 25 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1, THP-1, U2OS
275602 30

TTG ...

LQR ...

Ribo-seq
TTG 16 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, U2OS
275575 45

CTG ...

LEH ...

Ribo-seq
CTG 14 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, U2OS
275619 117

ATG ...

MRG ...

Ribo-seq
ATG 12 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, U2OS
896485 258

CAA ...

QGS ...

Ribo-seq
CAA 3 sORFs_org_Human
    ncRNA
    sORF
HeLa, Jurkat, THP-1
95527 120

GTG ...

VPA ...

Ribo-seq
GTG 21 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
RPE-1, THP-1, U2OS
95556 60

TTG ...

LAV ...

Ribo-seq
TTG 20 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, U2OS
1295906 168

GTG ...

VDP ...

Ribo-seq
GTG moderate 2 sORFs_org_Human
    ncRNA
    sORF
BJ, HEK293T
2419975 45

CTG ...

LIF ...

Ribo-seq
CTG 1 sORFs_org_Human
    ncRNA
    sORF
HFF
275568 78

ATG ...

MLA ...

Ribo-seq
ATG 18 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
Jurkat, LCL, MDA-MB-231,
RPE-1, U2OS
523752 66

TTG ...

LVQ ...

Ribo-seq
TTG 7 sORFs_org_Human
    ncRNA
    sORF
BJ, HeLa, HFF,
MDA-MB-231, RPE-1, U2OS
523741 60

GTG ...

VMI ...

Ribo-seq
GTG 15 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, U2OS
480586 39

CTG ...

LEI ...

Ribo-seq
CTG strong 5 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HEK293T,
HeLa, MDA-MB-231
97583 132

CTG ...

LAD ...

Ribo-seq
CTG 10 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014, HEK293,
hES, HFF, RPE-1
523770 42

CTG ...

LLI ...

Ribo-seq
CTG 13 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, U2OS
95552 102

GTG ...

VSD ...

Ribo-seq
GTG 23 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
Jurkat, MDA-MB-231, RPE-1,
THP-1, U2OS
896503 36

ACG ...

TFP ...

Ribo-seq
ACG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
896491 147

TCA ...

SKQ ...

Ribo-seq
TCA 2 sORFs_org_Human
    ncRNA
    sORF
HEK293, Jurkat
275573 66

ATG ...

MGQ ...

Ribo-seq
ATG 15 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, U2OS
1499395 60

CTG ...

LTS ...

Ribo-seq
CTG 7 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HEK293,
HFF, MDA-MB-231, RPE-1
404652 147

CTG ...

LTS ...

Ribo-seq
CTG 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
404644 54

GAG ...

ELL ...

Ribo-seq
GAG 2 sORFs_org_Human
    ncRNA
    sORF
HCT116, Jurkat
275608 63

CTG ...

LAC ...

Ribo-seq
CTG 21 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, THP-1, U2OS
97551 78

GTG ...

VNS ...

Ribo-seq
GTG 14 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014, HAP1,
HEK293, HeLa, hES,
HFF, RPE-1, U2OS
1499474 63

CTG ...

LLV ...

Ribo-seq
CTG weak 5 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HeLa,
MDA-MB-231
95545 228

GTG ...

VAE ...

Ribo-seq
GTG 18 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HeLa,
hES, HFF, RPE-1,
THP-1, U2OS
95533 57

GTG ...

VVE ...

Ribo-seq
GTG 24 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1, U2OS
523750 69

TTG ...

LFF ...

Ribo-seq
TTG 5 sORFs_org_Human
    ncRNA
    sORF
BJ, HeLa, HFF,
U2OS
404638 111

CGA ...

RDY ...

Ribo-seq
CGA 2 sORFs_org_Human
    ncRNA
    sORF
HCT116, Jurkat
1202276 33

GTG ...

VTL ...

Ribo-seq
GTG 8 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
hES, HFF, RPE-1
95547 210

CTG ...

LAN ...

Ribo-seq
CTG 18 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014, HAP1,
HEK293, HeLa, hES,
HFF, RPE-1, THP-1,
U2OS
95535 54

GTG ...

VET ...

Ribo-seq
GTG 24 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1, U2OS
95525 63

TTG ...

LSR ...

Ribo-seq
TTG 17 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, U2OS
1499434 240

ATG ...

MTA ...

Ribo-seq
ATG 3 sORFs_org_Human
    ncRNA
    sORF
BJ, HFF
97565 183

TTG ...

LAK ...

Ribo-seq
TTG 21 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, THP-1,
U2OS
896517 162

TGT ...

CDR ...

Ribo-seq
TGT 2 sORFs_org_Human
    ncRNA
    sORF
HEK293, Jurkat
1046398 48

ATG ...

MKM ...

Ribo-seq
ATG 2 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014
896479 42

GGA ...

GDS ...

Ribo-seq
GGA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
97557 33

ATG ...

MLV ...

Ribo-seq
ATG 15 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, HFF, MDA-MB-231,
RPE-1
896524 33

GCT ...

AVG ...

Ribo-seq
GCT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
97575 42

GTG ...

VDD ...

Ribo-seq
GTG 3 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014, HEK293
1128844 75

CTG ...

LTW ...

Ribo-seq
CTG 13 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HEK293,
HeLa, hES, HFF,
MDA-MB-231, RPE-1
97553 93

TTG ...

LAS ...

Ribo-seq
TTG 19 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
RPE-1, THP-1, U2OS
523754 51

CTG ...

LPS ...

Ribo-seq
CTG 12 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
U2OS
1718305 153

ATG ...

MFL ...

Ribo-seq
ATG 6 sORFs_org_Human
    ncRNA
    sORF
Blood, HEK293, HeLa,
HFF, RPE-1
523743 57

ATG ...

MIL ...

Ribo-seq
ATG 15 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, U2OS
404648 162

GGG ...

GSG ...

Ribo-seq
GGG 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
97573 126

GTG ...

VAN ...

Ribo-seq
GTG 22 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, THP-1,
U2OS
95531 66

GTG ...

VAE ...

Ribo-seq
GTG 24 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1, U2OS
97555 72

CTG ...

LNQ ...

Ribo-seq
CTG 13 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014, HEK293,
HeLa, hES, HFF,
RPE-1, THP-1
896462 33

ACC ...

TLT ...

Ribo-seq
ACC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
97569 159

CTG ...

LQN ...

Ribo-seq
CTG 22 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, THP-1,
U2OS
1046409 207

CTG ...

LDV ...

Ribo-seq
CTG 2 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014
97545 45

TTG ...

LTR ...

Ribo-seq
TTG 18 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HeLa,
hES, HFF, MDA-MB-231,
RPE-1, U2OS
97595 54

CTG ...

LRL ...

Ribo-seq
CTG 15 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, U2OS
896497 45

TGG ...

WWT ...

Ribo-seq
TGG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
1295908 153

CTG ...

LSP ...

Ribo-seq
CTG weak 2 sORFs_org_Human
    ncRNA
    sORF
BJ, HEK293T
3199421 51

CTA ...

LKK ...

Ribo-seq
CTA 1 sORFs_org_Human
    ncRNA
    sORF
HEK293
2123686 51

ATG ...

MIF ...

Ribo-seq
ATG 2 sORFs_org_Human
    ncRNA
    sORF
BJ, HFF
896483 51

TGG ...

WLT ...

Ribo-seq
TGG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
1202256 102

GTG ...

VFF ...

Ribo-seq
GTG 12 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293T, HeLa, hES,
HFF, MDA-MB-231, RPE-1
404650 282

GCA ...

ADP ...

Ribo-seq
GCA 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
896454 75

CAC ...

HQA ...

Ribo-seq
CAC 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
2420002 291

ATG ...

MAV ...

Ribo-seq
ATG 1 sORFs_org_Human
    ncRNA
    sORF
HFF
896530 189

TCA ...

SGK ...

Ribo-seq
TCA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
896470 108

GTT ...

VGE ...

Ribo-seq
GTT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
97549 81

TTG ...

LVN ...

Ribo-seq
TTG 14 sORFs_org_Human
    ncRNA
    sORF
BJ, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293, HeLa,
hES, HFF, RPE-1,
U2OS
1133576 60

GTG ...

VKE ...

Ribo-seq
GTG 3 sORFs_org_Human
    ncRNA
    sORF
HEK293, hES, HFF
3199426 165

AAG ...

KCD ...

Ribo-seq
AAG 1 sORFs_org_Human
    ncRNA
    sORF
HEK293
896487 138

AGT ...

SGK ...

Ribo-seq
AGT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
404640 108

GGA ...

GIS ...

Ribo-seq
GGA 1 sORFs_org_Human
    ncRNA
    sORF
HCT116
1128847 66

CTG ...

LPE ...

Ribo-seq
CTG 13 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HEK293,
HeLa, hES, HFF,
MDA-MB-231, RPE-1
896495 78

GAA ...

EDR ...

Ribo-seq
GAA 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
896509 60

TGG ...

WID ...

Ribo-seq
TGG 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
1046424 234

TTG ...

LAE ...

Ribo-seq
TTG 2 sORFs_org_Human
    ncRNA
    sORF
guo_2014, HEK293
95541 63

CTG ...

LGT ...

Ribo-seq
CTG 28 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, loayza_puch_2016,
MDA-MB-231, RPE-1, THP-1,
U2OS
275592 69

CTG ...

LEK ...

Ribo-seq
CTG 18 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
U2OS
896501 183

GAT ...

DDI ...

Ribo-seq
GAT 1 sORFs_org_Human
    ncRNA
    sORF
Jurkat
275579 150

CTG ...

LKY ...

Ribo-seq
CTG 5 sORFs_org_Human
    ncRNA
    sORF
BJ, HeLa, HFF,
LCL, RPE-1
97579 153

GTG ...

VDQ ...

Ribo-seq
GTG 13 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014, HAP1,
HEK293, HeLa, hES,
HFF, RPE-1
3199423 123

AGG ...

RRF ...

Ribo-seq
AGG 1 sORFs_org_Human
    ncRNA
    sORF
HEK293
404646 141

CTC ...

LTS ...

Ribo-seq
CTC 2 sORFs_org_Human
    ncRNA
    sORF
HCT116, HEK293
97559 30

CTG ...

LVS ...

Ribo-seq
CTG 14 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, MDA-MB-231, RPE-1
97599 141

GTG ...

VVS ...

Ribo-seq
GTG 15 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, guo_2014,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
RPE-1, U2OS
275581 123

TTG ...

LQR ...

Ribo-seq
TTG 9 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HeLa,
hES, HFF, LCL,
RPE-1
275571 69

TTG ...

LMG ...

Ribo-seq
TTG 16 sORFs_org_Human
    ncRNA
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, U2OS
275604 108

GTG ...

VSR ...

Ribo-seq
GTG 4 sORFs_org_Human
    ncRNA
    sORF
BJ, guo_2014, HeLa,
LCL

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS