Transcript 9532 | MetamORF

Transcript

ID CARD

MetamORF ID

9532

ENST00000539181

Name

FKBP4-203

Strand

Biotype

protein_coding

Start-end positions

2801178-2801803

CDS Start-stop positions

-2801687

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

HGNC:3720

Aliases

ENSG00000004478,
FKBP4, FKBP52, FKBP59,
HGNC:3720, NCBI:2288, OFF:FKBP4

Chr 12

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9534	171	TTG ...	LNW ...	Ribo-seq	TTG		23	sORFs_org_Human	sORF	BJ, Blood, HAP1, HCT116, HEK293, HEK293T, HeLa, Jurkat, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
410114	75	GAA ...	EGS ...	Ribo-seq	GAA		1	sORFs_org_Human	sORF	HCT116
410116	57	AGA ...	RRS ...	Ribo-seq	AGA		2	sORFs_org_Human	sORF	HCT116, Jurkat
9538	96	CTG ...	LCA ...	Ribo-seq	CTG		23	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
9540	63	GTG ...	VPA ...	Ribo-seq	GTG	weak	30	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
9531	177	ATG ...	MTL ...	Ribo-seq	ATG		21	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
9542	66	TTG ...	LPG ...	Ribo-seq	TTG		10	sORFs_org_Human	sORF	BJ, HAP1, HEK293, HEK293T, loayza_puch_2016, MM1S
1095083	45	ATG ...	MPI ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF	HEK293, MM1S
918380	108	AGA ...	RPS ...	Ribo-seq	AGA		1	sORFs_org_Human	sORF	Jurkat
9536	156	CTG ...	LIS ...	Ribo-seq	CTG		20	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS

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