Transcript 95013 | MetamORF

Transcript

ID CARD

MetamORF ID

95013

ENST00000481819

Name

HNRNPH3-208

Strand

Biotype

processed_transcript

Start-end positions

68336806-68342271

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

HGNC:5043

Aliases

2H9,
ENSG00000096746, HGNC:5043, HNRNPH3,
HNRPH3, NCBI:3189, OFF:HNRNPH3

Chr 10

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
406237	165	CAG ...	QGG ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	HCT116
1309702	105	GGG ...	GTV ...	Ribo-seq	GGG	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
404395	108	GAT ...	DGT ...	Ribo-seq	GAT	strong	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
95015	66	ATG ...	MTL ...	Ribo-seq	ATG	weak	29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95012	75	ATG ...	MVQ ...	Ribo-seq	ATG	strong	32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895403	69	AGC ...	SKE ...	Ribo-seq	AGC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
404391	144	TGG ...	WVM ...	Ribo-seq	TGG	strong	1	sORFs_org_Human	ncRNA sORF	HCT116
895401	33	GAC ...	DYH ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
97084	45	TTG ...	LQQ ...	Ribo-seq	TTG	weak	22	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
895399	69	ACG ...	TTS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
95021	36	GTG ...	VDY ...	Ribo-seq	GTG	moderate	26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
404393	120	AAT ...	NDA ...	Ribo-seq	AAT	moderate	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
95017	57	GTG ...	VMG ...	Ribo-seq	GTG	weak	28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895394	132	CAT ...	HNG ...	Ribo-seq	CAT	moderate	5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, Jurkat, THP-1
95019	54	ATG ...	MGQ ...	Ribo-seq	ATG	strong	30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895405	36	AGA ...	RGN ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat

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