Transcript 94963 | MetamORF

Transcript

ID CARD

MetamORF ID

94963

ENST00000491922

Name

CCDC6-202

Strand

Biotype

retained_intron

Start-end positions

59791752-59805576

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

HGNC:18782

Aliases

CCDC6,
D10S170, ENSG00000108091, H4,
HGNC:18782, NCBI:8030, OFF:CCDC6,
PTC, TPC, TST1

Chr 10

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2951109	111	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	hES
1815985	36	TTG ...	LAE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
895188	246	GTT ...	VGF ...	Ribo-seq	GTT		1	sORFs_org_Human	Intronic sORF	Jurkat
895183	147	ACG ...	TPP ...	Ribo-seq	ACG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
933631	72	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	Brain, HeLa, hES
895181	30	CAT ...	HSA ...	Ribo-seq	CAT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
895190	45	TGC ...	CKS ...	Ribo-seq	TGC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
2951103	231	CTG ...	LTC ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	hES
895192	132	CAA ...	QGL ...	Ribo-seq	CAA		1	sORFs_org_Human	Intronic sORF	Jurkat
630223	42	ATG ...	MQV ...	Ribo-seq	ATG	weak	7	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
1815993	81	CTG ...	LNF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
1815989	45	ATG ...	MAQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
94962	72	CTG ...	LEC ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, Jurkat, MDA-MB-231
895186	234	CCA ...	PPT ...	Ribo-seq	CCA		1	sORFs_org_Human	Intronic sORF	Jurkat
404339	63	TGT ...	CVQ ...	Ribo-seq	TGT		1	sORFs_org_Human	Intronic sORF	HCT116
933629	69	TTG ...	LLY ...	Ribo-seq	TTG		5	sORFs_org_Human	Intronic sORF	Blood, Brain, HEK293, HeLa, hES
1815991	69	TTG ...	LGL ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Intronic sORF	HeLa
1815987	45	TTG ...	LYC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
2297347	174	CTG ...	LTN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Intronic sORF	hES, MDA-MB-231, RPE-1
404337	105	AGC ...	SPI ...	Ribo-seq	AGC		1	sORFs_org_Human	Intronic sORF	HCT116
1815995	96	ATG ...	MHE ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Intronic sORF	HeLa

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