Transcript 94516 | MetamORF

Transcript

ID CARD

MetamORF ID

94516

ENST00000480528

Name

ATP5C1-209

Strand

Biotype

processed_transcript

Start-end positions

7802243-7807801

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:833

Aliases

ATP5C,
ATP5C1, ATP5CL1, ATP5F1C,
ENSG00000165629, HGNC:833, NCBI:509,
OFF:ATP5F1C

Chr 10

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1815116	63	TTG ...	LFL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	ncRNA sORF	HeLa
94532	36	TTG ...	LIE ...	Ribo-seq	TTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
94530	78	TTG ...	LTF ...	Ribo-seq	TTG		33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
94518	66	TTG ...	LML ...	Ribo-seq	TTG	moderate	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
403960	195	TAT ...	YDD ...	Ribo-seq	TAT		1	sORFs_org_Human	ncRNA sORF	HCT116
1815118	69	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa
94515	75	ATG ...	MTI ...	Ribo-seq	ATG	weak	30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
403964	180	GCT ...	ADV ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	HCT116
94526	171	CTG ...	LQN ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HEK293, HeLa, MM1S
403966	99	GAG ...	EMI ...	Ribo-seq	GAG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
933163	147	CTG ...	LAN ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HEK293, HeLa
893291	45	ATT ...	ITK ...	Ribo-seq	ATT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
893293	39	GAT ...	DDS ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1815122	60	TTG ...	LSE ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa
94520	63	ATG ...	MLT ...	Ribo-seq	ATG	weak	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
94522	60	CTG ...	LTC ...	Ribo-seq	CTG	moderate	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
94534	36	TTG ...	LKL ...	Ribo-seq	TTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1815114	69	TTG ...	LIL ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa
1815120	66	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa
94524	174	GTG ...	VLQ ...	Ribo-seq	GTG		12	sORFs_org_Human	ncRNA sORF	Brain, guo_2014, HEK293, HeLa, MM1S
403962	69	ATA ...	ILM ...	Ribo-seq	ATA	moderate	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
893296	66	CGT ...	RTR ...	Ribo-seq	CGT		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
94528	84	TTG ...	LTL ...	Ribo-seq	TTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
893289	54	TGC ...	CCK ...	Ribo-seq	TGC	moderate	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat

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