Transcript 94492 | MetamORF

Transcript

ID CARD

MetamORF ID

94492

ENST00000460089

Name

KIN-202

Strand

Biotype

processed_transcript

Start-end positions

7761233-7774878

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:6327

Aliases

ENSG00000151657,
HGNC:6327, KIN, KIN17,
NCBI:22944, OFF:KIN, Rts2

Chr 10

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1132588	93	GTG ...	VKI ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
190278	159	CTG ...	LGP ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF, LCL, U2OS
1135531	174	CTG ...	LGE ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES
893260	69	GAG ...	EHV ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1135725	81	CTG ...	LKL ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
893258	60	GCT ...	AHP ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
272746	117	GTG ...	VKR ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, LCL
2294950	33	CTG ...	LPE ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231
2536237	66	GTG ...	VFY ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
272748	144	CTG ...	LKT ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, LCL
94491	54	TTG ...	LKR ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	HEK293, LCL, MDA-MB-231
1135533	195	GTG ...	VKI ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, RPE-1

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