Transcript 9352 | MetamORF

Transcript

ID CARD

MetamORF ID

9352

ENST00000395449

Name

ARFGAP2-201

Strand

Biotype

processed_transcript

Start-end positions

47165215-47176859

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:13504

Aliases

ARFGAP2,
ENSG00000149182, FLJ14576, HGNC:13504,
IRZ, NCBI:84364, OFF:ARFGAP2,
Zfp289, ZNF289

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2330513	207	GTG ...	VPF ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	hES, MDA-MB-231
917491	210	CAG ...	QLS ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
917505	123	AAC ...	NVL ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
409962	126	GGG ...	GNV ...	Ribo-seq	GGG		1	sORFs_org_Human	ncRNA sORF	HCT116
105773	216	CTG ...	LQQ ...	Ribo-seq	CTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
917499	186	AGC ...	SSS ...	Ribo-seq	AGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1733508	123	ATG ...	MDA ...	Ribo-seq	ATG		7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
917495	192	GCC ...	AIS ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
639039	117	CTG ...	LPT ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MM1S, RPE-1, THP-1
296105	54	GTG ...	VLA ...	Ribo-seq	GTG		8	sORFs_org_Human	ncRNA sORF	Blood, Brain, HeLa, hES, LCL, RPE-1, THP-1
1733498	108	ATG ...	MMP ...	Ribo-seq	ATG		4	sORFs_org_Human	ncRNA sORF	Blood, HeLa, HFF, MDA-MB-231
1733501	105	ATG ...	MPT ...	Ribo-seq	ATG		4	sORFs_org_Human	ncRNA sORF	Blood, HeLa, HFF, MDA-MB-231
296097	120	GTG ...	VLP ...	Ribo-seq	GTG		16	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1
639045	51	CTG ...	LAN ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	Blood, Brain, HeLa, hES, RPE-1, THP-1
9351	39	GTG ...	VRP ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
2330515	171	CTG ...	LIS ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
296100	129	CTG ...	LGN ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1513545	78	CTG ...	LPR ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	BJ, Blood, HeLa, hES, HFF, MDA-MB-231
639047	39	GTG ...	VMN ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	Brain, HeLa, hES, THP-1
917503	180	TCA ...	SDL ...	Ribo-seq	TCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
296102	72	GTG ...	VAG ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	Blood, Brain, HeLa, hES, LCL, RPE-1

Export data