Transcript 9316 | MetamORF

Transcript

ID CARD

MetamORF ID

9316

ENST00000529966

Name

GATD1-211

Strand

Biotype

processed_transcript

Start-end positions

770812-777483

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

HGNC:26616

Aliases

ENSG00000177225,
FLJ34283, GATD1, HGNC:26616,
NCBI:347862, OFF:GATD1, PDDC1

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9331	54	GTG ...	VKD ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293
526468	75	CTG ...	LVT ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
526477	45	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HFF
9345	270	CTG ...	LAS ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
526473	33	CTG ...	LQH ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, HFF
9339	78	CTG ...	LPL ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, hES, HFF
9349	252	CTG ...	LAR ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
9324	279	CTG ...	LTD ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1513424	102	CTG ...	LRA ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	BJ, MDA-MB-231
1984	72	CTG ...	LTD ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HFF
9315	69	GTG ...	VVE ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, hES, HFF, Jurkat
100640	90	GTG ...	VLD ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293
409906	282	GCC ...	ALT ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	HCT116
105717	114	GTG ...	VCE ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	HEK293, hES
9322	66	GTG ...	VED ...	Ribo-seq	GTG		8	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, hES, HFF
526470	87	CTG ...	LDR ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
2330314	93	ATG ...	MHA ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
1733346	60	CTG ...	LSA ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231
9320	240	CTG ...	LQH ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
526465	36	GTG ...	VQN ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	Brain
1981	63	CTG ...	LAS ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HFF

Export data