Transcript 905284

Transcript

ID CARD

MetamORF ID

905284

ENST00000328697

Name

CCDC34-202

Strand

Biotype

protein_coding

Start-end positions

27338514-27363868

CDS Start-stop positions

27338821-27363194

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:25079

Aliases

CCDC34,
ENSG00000109881, HGNC:25079, L15,
NCBI:91057, NY-REN-41, OFF:CCDC34,
RAMA3

Chr 11

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1993423	81	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
3113199	45	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES
905288	93	ATG ...	MRN ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1993425	84	ATG ...	MLK ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
1993429	162	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
905286	30	GTC ...	VSH ...	Ribo-seq	GTC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2326336	189	ATG ...	MRN ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2312288	117	GTG ...	VEI ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1993427	159	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
1993421	72	GTG ...	VRG ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
905283	33	GCC ...	ATQ ...	Ribo-seq	GCC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3113201	48	ATG ...	MLK ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES
1819862	45	TTG ...	LEL ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa

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