Transcript 903 | MetamORF

Transcript

ID CARD

MetamORF ID

903

ENST00000431586

Name

PPP1R8-204

Strand

Biotype

protein_coding

Start-end positions

27831324-27850432

CDS Start-stop positions

27841169-

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

HGNC:9296

Aliases

ard-1,
ARD1, ENSG00000117751, HGNC:9296,
NCBI:5511, NIPP-1, NIPP1,
OFF:PPP1R8, PPP1R8, PRO2047

Chr 1

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1295969	30	ATG ...	MLH ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	sORF	Blood, HEK293T, HeLa, MDA-MB-231
898512	45	CCA ...	PQA ...	Ribo-seq	CCA		1	sORFs_org_Human	sORF	Jurkat
898506	81	CCA ...	PVL ...	Ribo-seq	CCA		1	sORFs_org_Human	sORF	Jurkat
942	54	ATG ...	MNS ...	Ribo-seq	ATG		9	sORFs_org_Human	sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231
634354	90	TTG ...	LGE ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	sORF	Blood, HEK293T, MDA-MB-231, THP-1
1295947	114	TTG ...	LMR ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	sORF	HEK293T, MDA-MB-231
965	51	TTG ...	LVD ...	Ribo-seq	TTG		5	sORFs_org_Human	sORF	Blood, HAP1, HEK293, LCL, MDA-MB-231
1295964	57	TTG ...	LTT ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, MDA-MB-231
406263	135	TAC ...	YLF ...	Ribo-seq	TAC		1	sORFs_org_Human	sORF	HCT116
938	66	GTG ...	VER ...	Ribo-seq	GTG		8	sORFs_org_Human	sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231
1295953	111	ATG ...	MRR ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	sORF	HEK293T, MDA-MB-231
1126676	57	ATG ...	MNS ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF	HEK293, MDA-MB-231
1295973	93	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	HEK293T
1481952	60	ATG ...	MMN ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF	BJ, HEK293, MDA-MB-231
898599	60	CAT ...	HSV ...	Ribo-seq	CAT		1	sORFs_org_Human	sORF	Jurkat
1295961	69	GTG ...	VTL ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	sORF	Blood, HEK293T, MDA-MB-231
898495	90	CTG ...	LDV ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	Jurkat
634356	78	CTG ...	LIC ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, MDA-MB-231, THP-1
926	42	CTG ...	LKR ...	Ribo-seq	CTG		21	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
898510	60	CTT ...	LVY ...	Ribo-seq	CTT		1	sORFs_org_Human	sORF	Jurkat
1126674	69	GTG ...	VER ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF	BJ, HEK293, MDA-MB-231
911	75	TTG ...	LLS ...	Ribo-seq	TTG		13	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1205235	63	TTG ...	LAH ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	sORF	Blood, HAP1, HEK293T, HeLa, MDA-MB-231
905	111	TTG ...	LCD ...	Ribo-seq	TTG		23	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
898485	114	GGT ...	GKP ...	Ribo-seq	GGT		1	sORFs_org_Human	sORF	Jurkat
963	66	ATG ...	MWI ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231
940	57	ATG ...	MMN ...	Ribo-seq	ATG		9	sORFs_org_Human	sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231
898508	57	TGC ...	CTC ...	Ribo-seq	TGC		1	sORFs_org_Human	sORF	Jurkat
902	159	CTG ...	LII ...	Ribo-seq	CTG		21	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
406269	120	AAC ...	NPD ...	Ribo-seq	AAC		2	sORFs_org_Human	sORF	HCT116, Jurkat
936	78	ATG ...	MRR ...	Ribo-seq	ATG		8	sORFs_org_Human	sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231
509058	225	TTG ...	LLS ...	Ribo-seq	TTG		3	sORFs_org_Human	sORF	HEK293T, HeLa, U2OS

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