Transcript 8961 | MetamORF

Transcript

ID CARD

MetamORF ID

8961

ENST00000528364

Name

CLNS1A-210

Strand

Biotype

protein_coding

Start-end positions

77618533-77637776

CDS Start-stop positions

77619628-77637714

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

HGNC:2080

Aliases

CLCI,
CLNS1A, ENSG00000074201, HGNC:2080,
ICln, NCBI:1207, OFF:CLNS1A

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8992	219	ATG ...	MLN ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
9000	246	ATG ...	MKK ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
8990	216	TTG ...	LNL ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
8988	204	CTG ...	LNL ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
8960	63	ATG ...	MNK ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
917012	165	AGG ...	RQC ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8984	183	GTG ...	VIN ...	Ribo-seq	GTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
9006	255	CTG ...	LLL ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
8969	99	ATG ...	MTT ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, hES, MDA-MB-231
8986	192	TTG ...	LCL ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
8973	117	CTG ...	LRM ...	Ribo-seq	CTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
103442	30	ATG ...	MPN ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T
8975	153	CTG ...	LQC ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
8996	225	ATG ...	MMM ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
9002	249	CTG ...	LMK ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
9004	252	TTG ...	LLM ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
8965	78	ATG ...	MMW ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
8967	90	ATG ...	MEK ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
8982	225	CTG ...	LMV ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
9008	285	ATG ...	MPN ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
8971	111	ATG ...	MRI ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
8980	222	ATG ...	MVT ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
8994	222	ATG ...	MML ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
295582	42	CTG ...	LVP ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
8998	228	GTG ...	VMM ...	Ribo-seq	GTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
8963	75	ATG ...	MWK ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1

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