Transcript 8788 | MetamORF

Transcript

ID CARD

MetamORF ID

8788

ENST00000288937

Name

MRPL17-201

Strand

Biotype

protein_coding

Start-end positions

6680782-6683401

CDS Start-stop positions

6682118-6683296

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

HGNC:14053

Aliases

ENSG00000158042,
HGNC:14053, MRP-L26, MRPL17,
NCBI:63875, OFF:MRPL17, RPML26

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1094312	240	ATG ...	MRS ...	Ribo-seq	ATG	weak	14	sORFs_org_Human Johnstone2016	Alternative Overlapping sORF Upstream	BJ, Brain_tumor, HEK293, HeLa, hES, HFF, MM1S, RPE-1
3312478	528	ATG ...	MRL ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
8790	99	ATG ...	MLC ...	Ribo-seq	ATG		28	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
916699	51	ACG ...	TNE ...	Ribo-seq	ACG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1819121	36	ATG ...	MIT ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
295129	126	TTG ...	LFS ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, LCL, RPE-1
8787	72	ATG ...	MGS ...	Ribo-seq	ATG		30	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
282907	225	TTG ...	LPP ...	Ribo-seq	TTG	moderate	16	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HAP1, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1
1819115	69	ATG ...	MDS ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
282909	231	CTG ...	LKL ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HAP1, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1
8792	102	GTG ...	VML ...	Ribo-seq	GTG		27	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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