Transcript 8768 | MetamORF

Transcript

ID CARD

MetamORF ID

8768

ENST00000645620

Name

Strand

Biotype

protein_coding

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:2073

Aliases

CLN2,
ENSG00000166340, HGNC:2073, NCBI:1200,
OFF:TPP1, SCAR7, TPP1

Chr 11

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
105376	210	CTG ...	LTL ...	Ribo-seq	CTG		20	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
105384	252	CTG ...	LTL ...	Ribo-seq	CTG		22	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
105374	195	GTG ...	VQK ...	Ribo-seq	GTG		21	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
294988	66	GTG ...	VGG ...	Ribo-seq	GTG		17	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
295011	300	CTG ...	LVQ ...	Ribo-seq	CTG		17	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
105372	180	TTG ...	LAA ...	Ribo-seq	TTG		20	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
105382	237	GTG ...	VAD ...	Ribo-seq	GTG		21	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
8767	150	GTG ...	VIT ...	Ribo-seq	GTG		21	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
294994	120	CTG ...	LTS ...	Ribo-seq	CTG		16	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
638582	153	CTG ...	LFR ...	Ribo-seq	CTG		5	sORFs_org_Human	sORF	Brain, HFF, MM1S, RPE-1, THP-1
105388	297	GTG ...	VQA ...	Ribo-seq	GTG		25	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
105378	225	GTG ...	VRP ...	Ribo-seq	GTG		21	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
294990	96	CTG ...	LLP ...	Ribo-seq	CTG		17	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
105386	288	GTG ...	VSD ...	Ribo-seq	GTG		24	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
105380	228	CTG ...	LVR ...	Ribo-seq	CTG		21	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
294992	99	CTG ...	LLL ...	Ribo-seq	CTG		16	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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