Transcript 86858 | MetamORF

Transcript

ID CARD

MetamORF ID

86858

ENST00000311772

Name

PPP1R8-202

Strand

Biotype

protein_coding

Start-end positions

27830778-27851676

CDS Start-stop positions

27830836-27850446

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

HGNC:9296

Aliases

ard-1,
ARD1, ENSG00000117751, HGNC:9296,
NCBI:5511, NIPP-1, NIPP1,
OFF:PPP1R8, PPP1R8, PRO2047

Chr 1

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
283036	69	ATG ...	MNP ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
86860	114	ATG ...	MGG ...	Ribo-seq	ATG		19	sORFs_org_Human Johnstone2016	Alternative Overlapping sORF Upstream	BJ, Blood, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
3400102	114	ATG ...	MGG ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Overlapping sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
1295953	111	ATG ...	MRR ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
86857	132	GTG ...	VLR ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
882134	66	GCC ...	ASR ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3400108	1056	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
882132	93	TGG ...	WRQ ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1989336	120	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa

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