Transcript 8390 | MetamORF

Transcript

ID CARD

MetamORF ID

8390

ENST00000278849

Name

INCENP-201

Strand

Biotype

protein_coding

Start-end positions

62123998-62152752

CDS Start-stop positions

62128162-62151976

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:6058

Aliases

ENSG00000149503,
FLJ31633, HGNC:6058, INCENP,
NCBI:3619, OFF:INCENP

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1512233	36	GTG ...	VPG ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
2315402	63	TTG ...	LYL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
3201176	33	TGC ...	CSL ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
286246	141	TTG ...	LEP ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
294314	147	GTG ...	VSW ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
2544701	39	ATG ...	MAG ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
908215	111	ATA ...	ISS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
409582	186	CGC ...	RSR ...	Ribo-seq	CGC		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, Jurkat
1506321	54	GTG ...	VRN ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
908221	60	TCT ...	SGT ...	Ribo-seq	TCT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2315407	63	CTG ...	LSG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2315381	168	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2315405	66	CTG ...	LLS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
908219	78	AGC ...	SAP ...	Ribo-seq	AGC	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
908213	117	TGG ...	WRI ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8389	72	ATG ...	MFR ...	Ribo-seq	ATG		10	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231
2315400	69	CTG ...	LSG ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1
2327871	117	ATG ...	MRS ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231
1094754	63	ATG ...	MKT ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, hES, MDA-MB-231
294312	216	TTG ...	LDR ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
908211	138	GAA ...	EPF ...	Ribo-seq	GAA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294316	42	CTG ...	LWT ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
8392	60	ATG ...	MDP ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231, U2OS
409580	228	ATA ...	IPP ...	Ribo-seq	ATA		3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, HEK293, Jurkat

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