Transcript 838 | MetamORF

Transcript

ID CARD

MetamORF ID

838

ENST00000463089

Name

TIAL1-207

Strand

Biotype

processed_transcript

Start-end positions

119575219-119577214

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

HGNC:11804

Aliases

ENSG00000151923,
HGNC:11804, NCBI:7073, OFF:TIAL1,
TIAL1, TIAR

Chr 10

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1827	234	GTG ...	VYG ...	Ribo-seq	GTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
405862	105	TCG ...	SVN ...	Ribo-seq	TCG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
98841	138	GTG ...	VNG ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	guo_2014
405858	66	TGC ...	CYW ...	Ribo-seq	TGC		1	sORFs_org_Human	ncRNA sORF	HCT116
405860	78	CAT ...	HVV ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	HCT116
900662	57	GGT ...	GKE ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
902279	264	GAC ...	DYS ...	Ribo-seq	GAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
902283	210	GGA ...	GQY ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
840	102	GTG ...	VNG ...	Ribo-seq	GTG		24	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
902281	183	GTA ...	VPP ...	Ribo-seq	GTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
837	75	GTG ...	VVK ...	Ribo-seq	GTG		12	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1

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