Transcript 819 | MetamORF

Transcript

ID CARD

MetamORF ID

819

ENST00000468761

Name

STX12-203

Strand

Biotype

processed_transcript

Start-end positions

27773255-27802039

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:11430

Aliases

ENSG00000117758,
HGNC:11430, NCBI:23673, OFF:STX12,
STX12, STX13, STX14

Chr 1

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
898401	45	ACA ...	TVT ...	Ribo-seq	ACA	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
882053	210	GAA ...	ETN ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
406239	30	CAG ...	QVG ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	HCT116
898416	90	GAA ...	ETN ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
406241	66	GTA ...	VSE ...	Ribo-seq	GTA	moderate	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
898404	114	CAC ...	HST ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
898422	60	TCC ...	SLP ...	Ribo-seq	TCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
86832	177	TTG ...	LPL ...	Ribo-seq	TTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
898390	69	TCA ...	SAK ...	Ribo-seq	TCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
86830	195	CTG ...	LKE ...	Ribo-seq	CTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
898375	240	CAG ...	QTC ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
818	57	TTG ...	LMS ...	Ribo-seq	TTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, U2OS
835	57	TTG ...	LPL ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	Brain, HEK293
935376	39	GTG ...	VQR ...	Ribo-seq	GTG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, Monocyte, RPE-1
898424	132	CAG ...	QKE ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
882043	234	CAC ...	HST ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
406235	93	CGT ...	RAA ...	Ribo-seq	CGT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
831	78	TTG ...	LLK ...	Ribo-seq	TTG		5	sORFs_org_Human	ncRNA sORF	Brain, HEK293, HFF, RPE-1
833	75	CTG ...	LKE ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	Brain, HEK293, HFF, RPE-1
406247	60	GAA ...	EKE ...	Ribo-seq	GAA	weak	1	sORFs_org_Human	ncRNA sORF	HCT116
898396	75	GCA ...	AGL ...	Ribo-seq	GCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
86828	198	TTG ...	LLK ...	Ribo-seq	TTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
99981	36	TTG ...	LPE ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, HFF, LCL, MDA-MB-231
882061	180	TCC ...	SLP ...	Ribo-seq	TCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
898369	123	CAT ...	HVI ...	Ribo-seq	CAT		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, Jurkat, THP-1
844	78	GTG ...	VQR ...	Ribo-seq	GTG	moderate	22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
282923	57	CTG ...	LKR ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, HFF, LCL, MDA-MB-231, RPE-1
282917	75	CTG ...	LCR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	ncRNA sORF	BJ, Blood, hES, HFF, LCL, MDA-MB-231, RPE-1
1205211	51	TTG ...	LLD ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HAP1, HEK293
935383	51	TTG ...	LIS ...	Ribo-seq	TTG		5	sORFs_org_Human	ncRNA sORF	BJ, Brain, HEK293, HeLa, RPE-1

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