Transcript 812 | MetamORF

Transcript

ID CARD

MetamORF ID

812

ENST00000369301

Name

NHLRC2-201

Strand

Biotype

protein_coding

Start-end positions

113854661-113917194

CDS Start-stop positions

113854873-113908536

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:24731

Aliases

DKFZp779F115,
ENSG00000196865, FLJ20147, FLJ25621,
FLJ33312, HGNC:24731, MGC45492,
NCBI:374354, NHLRC2, OFF:NHLRC2

Chr 10

ORFs

86 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
405342	270	ATT ...	ITS ...	Ribo-seq	ATT	weak	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116
278525	36	CTG ...	LYN ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
405346	192	CGT ...	RGV ...	Ribo-seq	CGT	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116
278527	102	CTG ...	LET ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2303297	141	ATG ...	MVF ...	Ribo-seq	ATG	strong	3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2303351	30	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2303301	123	GTG ...	VFT ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
2303366	57	TTG ...	LYL ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1134514	36	GTG ...	VSL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	sORF Upstream	HEK293
1134516	30	TTG ...	LAW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	sORF Upstream	HEK293
2303299	126	TTG ...	LVF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
2303360	84	CTG ...	LMI ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2303332	108	GTG ...	VEM ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1817389	36	GTG ...	VVT ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2303306	72	GTG ...	VLF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
899101	33	AGG ...	RSI ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2303308	69	CTG ...	LFF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
2303326	48	GTG ...	VEQ ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
278515	33	TTG ...	LDL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, LCL, MDA-MB-231
2303330	114	CTG ...	LEV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2303322	30	ATG ...	MWQ ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1313987	78	TTG ...	LDF ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	sORF Upstream	BJ, HEK293
278539	66	GTG ...	VCW ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
1313989	165	GTG ...	VNA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, MDA-MB-231
2303285	177	GTG ...	VEG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	MDA-MB-231
278533	48	GTG ...	VYW ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HEK293, LCL, MDA-MB-231
278519	75	TTG ...	LEF ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
3199584	42	TCC ...	SCW ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2303318	57	CTG ...	LEE ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2303364	66	TTG ...	LKP ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
405349	81	TTC ...	FLL ...	Ribo-seq	TTC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
279790	111	CTG ...	LGA ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231, RPE-1, THP-1
1134512	63	TTG ...	LDL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	sORF Upstream	BJ, HEK293
2303362	81	ATG ...	MIA ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
278545	45	GTG ...	VCF ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, LCL, MDA-MB-231
405353	108	CAG ...	QEL ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
2303336	84	ATG ...	MPI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
899091	30	ATG ...	MQM ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, Jurkat, MDA-MB-231, RPE-1
899097	105	GAA ...	EMK ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1203014	81	ATG ...	MAT ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
278521	63	ATG ...	MGQ ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
899085	33	TTT ...	FGL ...	Ribo-seq	TTT	moderate	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
278537	42	CTG ...	LRV ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
2303334	102	ATG ...	MKR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2305689	30	CTG ...	LAN ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
1817387	57	ATG ...	MNA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
3199716	42	TCC ...	SCW ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
3300781	2181	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1720452	45	ATG ...	MGT ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2305685	48	TTG ...	LGC ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
278511	78	CTG ...	LLA ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
2303328	117	TTG ...	LLE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
405344	54	TGC ...	CFK ...	Ribo-seq	TGC	weak	3	sORFs_org_Human	sORF Upstream	BJ, HCT116, HEK293
278543	33	CTG ...	LAR ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
405355	39	GCT ...	ACV ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
278523	36	TTG ...	LWI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
1203012	30	CTG ...	LKE ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, MDA-MB-231
278517	81	CTG ...	LVL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
2303310	33	ATG ...	MMQ ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
1817391	33	GTG ...	VTY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1093158	30	ATG ...	MLQ ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
279792	69	ATG ...	MLQ ...	Ribo-seq	ATG		5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
1817393	42	GTG ...	VII ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
899093	84	AGT ...	SFL ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
899095	33	GGT ...	GRL ...	Ribo-seq	GGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2303320	45	ATG ...	MEY ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1817382	42	CTG ...	LRR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative sORF Upstream	HeLa, MDA-MB-231, RPE-1
1719803	30	ATG ...	MQS ...	Ribo-seq	ATG	weak	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
811	75	ATG ...	MDS ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
3199586	54	GAC ...	DSS ...	Ribo-seq	GAC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2303303	99	ATG ...	MKK ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
278535	30	TTG ...	LER ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2303338	60	TTG ...	LPN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
278529	87	ATG ...	MLP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
98757	30	ATG ...	MRR ...	Ribo-seq	ATG	weak	20	sORFs_org_Human Johnstone2016	Alternative sORF Upstream	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
98760	51	TTG ...	LER ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
899099	42	GGC ...	GRF ...	Ribo-seq	GGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
278531	51	ATG ...	MNQ ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
405351	33	GTT ...	VFF ...	Ribo-seq	GTT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
278507	66	ATG ...	MAE ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
278541	36	GTG ...	VLA ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
278513	75	CTG ...	LAN ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
1203016	51	CTG ...	LSV ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, MDA-MB-231
3300784	372	ATG ...	MSS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream	Brain_tumor, HEK293, HeLa, HFF
278509	99	TTG ...	LAR ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
1817395	33	GTG ...	VSY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa

Export data