Transcript 8007 | MetamORF

Transcript

ID CARD

MetamORF ID

8007

ENST00000300738

Name

RRM1-201

Strand

Biotype

protein_coding

Start-end positions

4094809-4138876

CDS Start-stop positions

4095013-4138383

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

HGNC:10451

Aliases

ENSG00000167325,
HGNC:10451, NCBI:6240, OFF:RRM1,
RRM1

Chr 11

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1731236	84	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1731230	117	TTG ...	LMQ ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1731238	66	ATG ...	MLR ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1208230	42	CTG ...	LVP ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	HAP1, hES, MDA-MB-231
633652	66	TTG ...	LDC ...	Ribo-seq	TTG	strong	12	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
293457	48	ATG ...	MAN ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
916025	66	GCA ...	ANT ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
105022	105	ATG ...	MAA ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
1731234	105	TTG ...	LKH ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
105024	81	TTG ...	LTK ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
406644	192	GTG ...	VAG ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Alternative sORF Upstream	BJ, HCT116, HEK293, HEK293T, HeLa, Jurkat, MM1S, RPE-1
1731227	141	CTG ...	LLG ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231
1298518	138	TTG ...	LGS ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, hES, MDA-MB-231
8006	45	ATG ...	MDS ...	Ribo-seq	ATG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
1731232	114	ATG ...	MQQ ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
105027	57	CTG ...	LLL ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, LCL, MDA-MB-231
105029	45	ATG ...	MTE ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, LCL, MDA-MB-231
2326768	45	ATG ...	MLV ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
638047	69	ATG ...	MAN ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231, THP-1

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